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Updated: May 15, 2026

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
[EML4-ALK fusion gene in patients with lung carcinoma: biology, diagnostics and targeted therapy]
1Centrum molekularni biologie a genove terapie, Interni hematologicka a onkologicka, klinika LF MU a FN Brno, Brno. alzbeta.vasikova@fnbrno.cz
Abstract:
Targeted therapy currently represents one of possible treatment strategies for lung cancer. High efficacy is achieved by specific inhibition of the target which is abnormally activated in a tumor cell and plays a key role in oncogenesis. EML4-ALK fusion gene, first described five years ago in patients with lung adenocarcinoma, undoubtedly has oncogenic potential and represents a promising candidate for targeted therapy. EML4-ALK fusion occurs due to paracentric inversion in the short arm of chromosome 2 and is detected in 3-5% of patients with non-small cell lung cancer. Moreover, additional fusion partners of ALK gene have been identified: TGF, KIF5B and KLC1. Targeted inhibition of constitutively activated ALK kinase mediated by crizotinib in patients positive for ALK gene rearrangements resulted in remarkable treatment response (57%) with minimal toxicity. Nevertheless, loss of response during crizotinib treatment was reported recently due to development of two resistant mutations (C1156Y and L1196M) within the kinase domain of the fusion protein. Therefore, novel, highly specific inhibitors able to overcome resistance of mutated EML4-ALK are needed. Molecular diagnostics plays an essential role in selection of suitable patients for targeted therapy and offers various methods for detection of ALK gene rearrangements. Identification of tumor-associated genetic changes together with development of novel molecular inhibitors shifts the treatment of oncologic patients towards individualized therapy.
Insights
Targeted therapy for lung cancer shows promise with EML4-ALK fusion gene inhibition. Novel inhibitors are needed to overcome resistance mutations for improved patient outcomes.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Targeted therapy offers a promising strategy for lung cancer treatment by inhibiting specific oncogenic drivers.
- The EML4-ALK fusion gene, identified in lung adenocarcinoma, plays a key role in oncogenesis and is a target for therapy.
- ALK gene rearrangements occur in 3-5% of non-small cell lung cancer patients, with various fusion partners identified.
Purpose of the Study:
- To review the role of EML4-ALK fusion gene in lung cancer.
- To discuss the efficacy and limitations of crizotinib in targeting ALK rearrangements.
- To highlight the need for novel inhibitors to overcome acquired resistance mutations.
Main Methods:
- Literature review of studies on EML4-ALK fusion gene and targeted therapies.
- Analysis of clinical trial data regarding crizotinib efficacy and resistance mechanisms.
- Discussion of molecular diagnostic methods for ALK rearrangements.
Main Results:
- EML4-ALK fusion gene is a validated oncogenic driver in lung adenocarcinoma.
- Crizotinib demonstrated significant response rates (57%) in ALK-positive non-small cell lung cancer patients.
- Acquired resistance to crizotinib can develop due to specific mutations (C1156Y, L1196M) in the ALK fusion protein.
Conclusions:
- Targeted inhibition of ALK rearrangements is effective in a subset of lung cancer patients.
- Development of resistance necessitates the search for next-generation ALK inhibitors.
- Molecular diagnostics are crucial for patient selection and the advancement of personalized lung cancer therapy.
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