Loss-of-function mutations in MGME1 impair mtDNA replication and cause multisystemic mitochondrial disease
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Updated: May 15, 2026

Modeling Mitochondrial Disease Using Brain Organoids: A Focus on Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episodes
Published on: October 10, 2025
Cornelia Kornblum1, Thomas J Nicholls, Tobias B Haack
1Department of Neurology, University of Bonn Medical Center, Bonn, Germany.
Abstract:
Known disease mechanisms in mitochondrial DNA (mtDNA) maintenance disorders alter either the mitochondrial replication machinery (POLG, POLG2 and C10orf2) or the biosynthesis pathways of deoxyribonucleoside 5'-triphosphates for mtDNA synthesis. However, in many of these disorders, the underlying genetic defect has yet to be discovered. Here, we identify homozygous nonsense and missense mutations in the orphan gene C20orf72 in three families with a mitochondrial syndrome characterized by external ophthalmoplegia, emaciation and respiratory failure. Muscle biopsies showed mtDNA depletion and multiple mtDNA deletions. C20orf72, hereafter MGME1 (mitochondrial genome maintenance exonuclease 1), encodes a mitochondrial RecB-type exonuclease belonging to the PD-(D/E)XK nuclease superfamily. We show that MGME1 cleaves single-stranded DNA and processes DNA flap substrates. Fibroblasts from affected individuals do not repopulate after chemically induced mtDNA depletion. They also accumulate intermediates of stalled replication and show increased levels of 7S DNA, as do MGME1-depleted cells. Thus, we show that MGME1-mediated mtDNA processing is essential for mitochondrial genome maintenance.
Insights
Mutations in the C20orf72 gene cause a mitochondrial syndrome. This gene, now named MGME1 (mitochondrial genome maintenance exonuclease 1), is essential for maintaining mitochondrial DNA integrity.
Area of Science:
- Genetics
- Molecular Biology
- Mitochondrial Biology
Background:
- Mitochondrial DNA (mtDNA) maintenance disorders arise from defects in replication or nucleotide biosynthesis.
- The genetic causes for many mtDNA maintenance disorders remain unknown.
- Previous research focused on known replication machinery and nucleotide pathways.
Purpose of the Study:
- To identify the genetic basis of an unknown mitochondrial syndrome.
- To investigate the function of the C20orf72 gene in mtDNA maintenance.
Main Methods:
- Genetic analysis of affected families to identify mutations.
- Biochemical assays to determine the enzymatic activity of C20orf72 (MGME1).
- Cellular studies using patient fibroblasts and MGME1-depleted cells to assess mtDNA replication and processing.
Main Results:
- Identified homozygous mutations in C20orf72 in three families with a severe mitochondrial syndrome.
- C20orf72 encodes MGME1, a mitochondrial RecB-type exonuclease with DNA processing capabilities.
- MGME1 deficiency leads to mtDNA depletion, deletions, stalled replication intermediates, and increased 7S DNA levels.
Conclusions:
- MGME1 is essential for mitochondrial genome maintenance.
- Mutations in C20orf72 (MGME1) cause a novel mitochondrial DNA maintenance disorder.
- MGME1's role in processing DNA substrates is critical for mtDNA stability.
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