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Related Concept Videos

Genomics02:02

Genomics

Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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Plant hormones—or phytohormones—are chemical molecules that modulate one or more physiological processes of a plant. In animals, hormones are often produced in specific glands and circulated via the circulatory system. However, plants lack hormone-producing glands.
Plant Hormones01:56

Plant Hormones

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RNA-seq03:21

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Related Experiment Video

Updated: May 15, 2026

Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling
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Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling

Published on: May 21, 2020

UniVIO: a multiple omics database with hormonome and transcriptome data from rice.

Toru Kudo1, Kenji Akiyama, Mikiko Kojima

  • 1RIKEN Plant Science Center, 1-7-22 Suehiro, Tsurumi, Yokohama, Japan.

Plant & Cell Physiology
|January 15, 2013
PubMed
Summary
This summary is machine-generated.

A new database, UniVIO, integrates plant hormone and gene expression data. This tool aids in understanding complex plant hormone signaling networks and their effects on growth and development.

More Related Videos

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
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Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

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Last Updated: May 15, 2026

Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling
07:18

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Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
08:09

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics

Published on: June 17, 2012

Area of Science:

  • Plant Biology
  • Molecular Biology
  • Genomics

Background:

  • Plant hormones are crucial signaling molecules regulating growth and development.
  • Hormone signaling involves complex cross-talk between signaling and metabolism.
  • Integrated analysis of hormone levels and gene expression is vital for understanding plant responses.

Purpose of the Study:

  • To develop a comprehensive database for integrated analysis of plant hormone and gene expression data.
  • To facilitate a deeper understanding of plant hormone actions and signaling pathways.

Main Methods:

  • Development of the Uniformed Viewer for Integrated Omics (UniVIO) database.
  • UniVIO displays hormone-metabolome (hormonome) and transcriptome data in a unified heatmap format.
  • Inclusion of data from rice plants and gibberellin signaling mutants.

Main Results:

  • UniVIO integrates diverse omics data for plant hormone research.
  • Data can be searched by substance name, probe ID, gene locus ID, or gene description.
  • A correlation search function allows users to identify relationships between hormone accumulation and gene expression.

Conclusions:

  • UniVIO provides a valuable resource for plant scientists studying hormone signaling.
  • The database enables integrative analysis of hormonome and transcriptome data.
  • Facilitates discovery of novel insights into plant growth regulation and responses to hormones.