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In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
The Usp8 deubiquitination enzyme is post-translationally modified by tyrosine and serine phosphorylation
Inez M J Meijer1, JoAnn Kerperien, Ana M Sotoca
1Department of Cell & Applied Biology, Faculty of Science, Nijmegen Center for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, The Netherlands.
Abstract:
The ERBB1-ERBB4 receptors belong to a family of receptor tyrosine kinases that trigger a network of signaling pathways after ligand binding, thereby regulating cellular growth, differentiation and development. Ligand-induced signaling through ERBB1, also known as EGFR, is attenuated by the clathrin-dependent receptor-mediated endocytosis and RING E3-ligase Cbl-mediated receptor ubiquitination, which is followed by incorporation into multi-vesicular bodies (MVBs) and subsequent degradation in lysosomes. Before incorporation into MVBs, the EGFR is deubiquitinated by Usp8. We previously demonstrated that Usp8 is tyrosine phosphorylated in an EGFR- and SRC-kinase dependent manner. In the present study we show that overexpression of constitutively active SRC enhances constitutive and ligand-induced Usp8 tyrosine phosphorylation. We also show that enhanced endosomal recycling of the EGFR induced by TGFα stimulation is associated with decreased Usp8 tyrosine phosphorylation. We therefore hypothesize that tyrosine phosphorylation of Usp8 could regulate the function of Usp8. To identify Usp8 tyrosine phosphorylation site(s), we used Usp8 deletion constructs, site-directed mutagenesis of nine individual Usp8 tyrosine residues and mass spectrometry (MS) analysis. Our results demonstrate that the MIT-domain is necessary for ligand-induced tyrosine phosphorylation of Usp8 1-504. However, mutation of three MIT domain tyrosine residues did not abolish Usp8 tyrosine phosphorylation. Similar results were obtained upon mutation of six exposed tyrosine residues in the Rhod domain and linker region. Repeated MS analysis of both Usp8 WT and C748A mutants readily detected serine phosphorylation, including the S680 14-3-3 binding site, but did not reveal any phospho-tyrosine residues. Notably, mutation of the tyrosine residue in the Usp8 14-3-3 binding motif (Y679) did not abolish phosphoserine-dependent binding of 14-3-3 to Usp8. Our findings are most consistent with the model that MIT domain-dependent recruitment of Usp8 to endosomal membranes is important for low stoichiometry SRC-mediated tyrosine phosphorylation of multiple Usp8 tyrosines. Our findings demonstrate that Usp8 is a target for the post-translational serine and tyrosine phosphorylation, most likely characterized by low abundant tyrosine phosphorylation on multiple residues, and high abundant serine phosphorylation on several residues.
Insights
Usp8 deubiquitinase is tyrosine and serine phosphorylated, regulating EGFR signaling. MIT domain is crucial for Usp8 tyrosine phosphorylation, impacting EGFR endosomal recycling and degradation.
Area of Science:
- Cellular signaling and receptor tyrosine kinases
- Protein post-translational modifications
- Endocytosis and protein trafficking
Background:
- Epidermal Growth Factor Receptor (EGFR) signaling is regulated by receptor tyrosine kinases (ERBB family).
- EGFR downregulation involves ubiquitination, endocytosis, and lysosomal degradation, with Usp8 deubiquitinating EGFR.
- Usp8 tyrosine phosphorylation is dependent on EGFR and SRC kinase activity.
Purpose of the Study:
- To investigate the role of Usp8 tyrosine phosphorylation in regulating EGFR signaling.
- To identify specific tyrosine residues and domains involved in Usp8 phosphorylation.
- To elucidate the mechanism by which Usp8 phosphorylation affects EGFR trafficking.
Main Methods:
- Site-directed mutagenesis of Usp8 tyrosine residues and deletion constructs.
- Mass spectrometry (MS) analysis to identify phosphorylation sites.
- Overexpression of constitutively active SRC and TGFα stimulation to study Usp8 phosphorylation dynamics.
Main Results:
- SRC kinase activity enhances both constitutive and ligand-induced Usp8 tyrosine phosphorylation.
- TGFα stimulation decreases Usp8 tyrosine phosphorylation, correlating with increased EGFR endosomal recycling.
- The MIT domain is necessary for Usp8 tyrosine phosphorylation, but specific MIT domain tyrosines are not solely responsible.
- Multiple tyrosine residues, likely on the surface, are phosphorylated at low stoichiometry, while serine phosphorylation is abundant.
Conclusions:
- Usp8 is a target for both serine and tyrosine post-translational modifications.
- MIT domain-dependent recruitment to endosomal membranes facilitates SRC-mediated tyrosine phosphorylation of Usp8.
- Usp8 phosphorylation likely regulates its function in EGFR trafficking and signaling attenuation.
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