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Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
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Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

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How the all-atom simulation and the ising-based theory reconcilewith each other on the helix-coil transition

M Takano, K Nagayama, A Suyama

    Journal of Biological Physics
    |January 25, 2013
    PubMed

    Keywords:
    Glauber dynamicsHelix-coil transitionIsing modelkineticsmolecular dynamics simulationrelaxationstatistical mechanicsstretched exponential

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