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Updated: May 14, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Def defines a conserved nucleolar pathway that leads p53 to proteasome-independent degradation
Ting Tao1, Hui Shi, Yihong Guan
1Key Laboratory for Molecular Animal Nutrition, College of Animal Sciences, Ministry of Education, Zhejiang University, Hangzhou, Zhejiang 310058, China.
Abstract:
p53 protein turnover through the ubiquitination pathway is a vital mechanism in the regulation of its transcriptional activity; however, little is known about p53 turnover through proteasome-independent pathway(s). The digestive organ expansion factor (Def) protein is essential for the development of digestive organs. In zebrafish, loss of function of def selectively upregulates the expression of p53 response genes, which raises a question as to what is the relationship between Def and p53. We report here that Def is a nucleolar protein and that loss of function of def leads to the upregulation of p53 protein, which surprisingly accumulates in the nucleoli. Our extensive studies have demonstrated that Def can mediate the degradation of p53 protein and that this process is independent of the proteasome pathway, but dependent on the activity of Calpain3, a cysteine protease. Our findings define a novel nucleolar pathway that regulates the turnover function of p53, which will advance our understanding of p53's role in organogenesis and tumorigenesis.
Insights
Digestive organ expansion factor (Def) regulates p53 protein levels via a novel nucleolar pathway. This proteasome-independent process involves Calpain3 and impacts organogenesis and tumorigenesis.
Area of Science:
- Molecular Biology
- Developmental Biology
- Cellular Biology
Background:
- p53 protein turnover is crucial for regulating its transcriptional activity.
- The role of proteasome-independent pathways in p53 regulation remains largely unknown.
- Digestive organ expansion factor (Def) is essential for digestive organ development.
Purpose of the Study:
- To investigate the relationship between Def and p53.
- To elucidate the mechanism of p53 regulation by Def.
- To identify novel pathways governing p53 turnover.
Main Methods:
- Zebrafish model system for loss-of-function studies.
- Immunofluorescence to detect p53 localization.
- Biochemical assays to assess protein degradation pathways.
Main Results:
- Loss of Def function in zebrafish upregulates p53 protein levels.
- p53 protein accumulates in the nucleoli upon Def loss.
- Def mediates p53 degradation through a proteasome-independent pathway dependent on Calpain3 activity.
Conclusions:
- Def regulates p53 turnover via a novel nucleolar pathway.
- This pathway is independent of the proteasome but relies on Calpain3.
- Findings advance understanding of p53's role in organogenesis and tumorigenesis.
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