Related Experiment Video
Updated: May 14, 2026

Simple and Fast Rolling Circle Amplification-Based Detection of Topoisomerase 1 Activity in Crude Biological Samples
Published on: December 2, 2022
Recent developments of DNA poisons--human DNA topoisomerase IIα inhibitors--as anticancer agents
Barbara Pogorelčnik1, Andrej Perdih, Tom Solmajer
1National Institute of Chemistry, Hajdrihova 19, 1001 Ljubljana, Slovenia.
Abstract:
DNA topoisomerases are an important family of enzymes that catalyze the induction of topological changes in the DNA molecule. Their ability to modulate the topology of the DNA makes DNA topoisomerases a key player in several vital cell processes such as replication, transcription, chromosome separation and segregation. Consequently, they already represent an important collection of macromolecular targets for some of the established anticancer drugs on the market as well as serve as templates in the development of novel anticancer drugs especially supported by recent structural advances in the field. The aim of this review is to provide an overview of the recent developments in the field of DNA poisons - a major class of human topoisomerase IIα inhibitors - of which several are already in clinical use. Due to frequently experienced occurrence of serious side effects of these molecules during therapy, especially cardiotoxicity issues, further drug design efforts were initiated already yielding novel promising compounds that have overcome this issue and already entered into clinical studies. Some of the presented and discussed chemical classes include intercalators, non-intercalators and redox-dependent poisons of human topoisomerase IIα. In particular, this review focuses on the currently available structure-based standpoint of molecular design and on the medicinal chemist's perspective of this field of anticancer drug design.
Insights
DNA topoisomerase IIα inhibitors, known as DNA poisons, are crucial anticancer drugs. Recent drug design efforts focus on reducing cardiotoxicity and improving efficacy, leading to promising new compounds in clinical studies.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- DNA topoisomerases regulate DNA topology, essential for vital cellular processes like replication and transcription.
- These enzymes are key targets for anticancer drugs, with several DNA poisons currently in clinical use.
- Existing topoisomerase IIα inhibitors can cause severe side effects, notably cardiotoxicity.
Purpose of the Study:
- To review recent advancements in the development of DNA poisons targeting human topoisomerase IIα.
- To highlight structure-based molecular design strategies for novel anticancer agents.
- To provide a medicinal chemist's perspective on current drug design efforts.
Main Methods:
- Review of recent literature on DNA topoisomerase IIα inhibitors.
- Analysis of structure-activity relationships for various chemical classes of DNA poisons.
- Discussion of clinical progress and challenges in anticancer drug development.
Main Results:
- Several novel DNA poison compounds have been developed, showing promise in overcoming cardiotoxicity.
- New compounds targeting human topoisomerase IIα have entered clinical studies.
- Structure-based design has facilitated the development of improved anticancer agents.
Conclusions:
- Continued research into DNA topoisomerase IIα inhibitors is vital for developing safer and more effective anticancer therapies.
- Structure-based molecular design offers a promising avenue for creating novel anticancer drugs with reduced side effects.
- The field is advancing towards clinically viable treatments with enhanced safety profiles.
Related Concept Videos
DNA Topoisomerases
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
Inhibitors of Bacterial DNA Synthesis
Cancer-Critical Genes II: Tumor Suppressor Genes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Cancer-Critical Genes II: Tumor Suppressor Genes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Targeted Cancer Therapies
There are several types of targeted therapies against specific...
Mutagenicity and Carcinogenicity

