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Next-generation Sequencing03:00

Next-generation Sequencing

The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Genomics02:02

Genomics

Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
Sanger Sequencing01:57

Sanger Sequencing

DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
Applications of Molecular Taxonomy01:20

Applications of Molecular Taxonomy

Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...

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Related Experiment Video

Updated: May 14, 2026

Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian Tissues
10:12

Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian Tissues

Published on: January 10, 2019

Using GBrowse 2.0 to visualize and share next-generation sequence data.

Lincoln D Stein1

  • 1Ontario Institute for Cancer Research, 101 College Street, Suite 800, Toronto, Ontario, Canada. lincoln.stein@gmail.com

Briefings in Bioinformatics
|February 5, 2013
PubMed
Summary
This summary is machine-generated.

GBrowse is a web-based genome browser that now supports next-generation sequencing (NGS) data. This guide provides instructions for configuring GBrowse to display SAM/BAM sequence alignment files for enhanced data visualization.

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Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • GBrowse is an established web-based genome browser.
  • It offers features like track uploading, sharing, and interactive configuration.
  • Previous versions supported standard genomic data visualization.

Purpose of the Study:

  • To provide instructions for configuring GBrowse to display next-generation sequencing (NGS) data.
  • To enable direct visualization of SAM and BAM sequence alignment files within GBrowse.
  • To enhance the utility of GBrowse for NGS data analysis.

Main Methods:

  • Step-by-step configuration guide for GBrowse version 2.0 and later.
  • Direct integration and display of SAM/BAM sequence alignment files.
  • Leveraging semantic zooming and support for local/remote data sources for SAM/BAM tracks.

Main Results:

  • GBrowse version 2.0 enables direct display of SAM and BAM files.
  • SAM/BAM tracks support semantic zooming and various data sources.
  • Successful configuration allows for visualization of NGS data within the browser.

Conclusions:

  • GBrowse is now capable of displaying NGS data, expanding its functionality.
  • The provided instructions facilitate the use of GBrowse for NGS analysis.
  • This update makes GBrowse a more comprehensive tool for genomic research.