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The preference for error-free or error-prone postreplication repair in Saccharomyces cerevisiae exposed to low-dose
Dongqing Huang1, Brian D Piening, Amanda G Paulovich
1Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Abstract:
Cells employ error-free or error-prone postreplication repair (PRR) processes to tolerate DNA damage. Here, we present a genome-wide screen for sensitivity to 0.001% methyl methanesulfonate (MMS). This relatively low dose is of particular interest because wild-type cells exhibit no discernible phenotypes in response to treatment, yet PRR mutants are unique among repair mutants in their exquisite sensitivity to 0.001% MMS; thus, low-dose MMS treatment provides a distinctive opportunity to study postreplication repair processes. We show that upon exposure to low-dose MMS, a PRR-defective rad18Δ mutant stalls into a lengthy G2 arrest associated with the accumulation of single-stranded DNA (ssDNA) gaps. Consistent with previous results following UV-induced damage, reactivation of Rad18, even after prolonged G2 arrest, restores viability and genome integrity. We further show that PRR pathway preference in 0.001% MMS depends on timing and context; cells preferentially employ the error-free pathway in S phase and do not require MEC1-dependent checkpoint activation for survival. However, when PRR is restricted to the G2 phase, cells utilize REV3-dependent translesion synthesis, which requires a MEC1-dependent delay and results in significant hypermutability.
Insights
Low-dose methyl methanesulfonate (MMS) reveals distinct DNA repair pathways. Postreplication repair (PRR) mutants show sensitivity, with error-free repair favored in S phase and error-prone repair in G2, impacting cell survival and mutation rates.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Cells utilize postreplication repair (PRR) to tolerate DNA damage, involving both error-free and error-prone mechanisms.
- Low-dose methyl methanesulfonate (MMS) is a unique tool for studying PRR as it specifically impacts PRR mutants without affecting wild-type cells.
Purpose of the Study:
- To investigate the genome-wide sensitivity of cells to low-dose MMS.
- To elucidate the distinct roles and preferences of PRR pathways in response to DNA damage at different cell cycle stages.
Main Methods:
- Genome-wide screening for sensitivity to 0.001% methyl methanesulfonate (MMS).
- Analysis of PRR-defective mutants (rad18Δ) under low-dose MMS exposure.
- Investigation of cell cycle arrest, single-stranded DNA gap accumulation, and the roles of Rad18, MEC1, and REV3.
Main Results:
- PRR-defective mutants exhibit exquisite sensitivity to low-dose MMS, leading to prolonged G2 arrest and single-stranded DNA gap accumulation.
- Rad18 reactivation restores viability and genome integrity after prolonged G2 arrest.
- PRR pathway choice is context-dependent: error-free repair is preferred in S phase (MEC1-independent), while error-prone translesion synthesis (REV3-dependent) is utilized in G2, requiring MEC1 and causing hypermutability.
Conclusions:
- Low-dose MMS is a sensitive probe for dissecting PRR pathway dynamics.
- The timing of DNA damage and repair influences pathway preference, impacting cellular survival and mutagenic outcomes.
- Understanding PRR pathway regulation is crucial for comprehending genome stability and mutation processes.
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