Related Experiment Video
Updated: May 14, 2026

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
Published on: April 8, 2020
Association effects in pure methanol via Monte Carlo simulations. I. Structure
Paula Gómez-Álvarez1, Luis Romaní, Diego González-Salgado
1Department of Applied Physics, University of Vigo, As Lagoas s/n, 32004 Ourense, Spain.
Abstract:
A methodology for the determination of the oligomers residing in a pure associated fluid was developed in the framework of the molecular simulation technique. First, the number of hydrogen bonds between each pair of molecules of the fluid is computed by using a specific criterion to define the hydrogen bonding formation. Secondly, sets of molecules linked by hydrogen bonds are identified and classified as linear chains, cyclic aggregates, branched linear chains, branched cyclic aggregates, and the rest of clustering. The procedure is applied over all the configurations produced in usual Monte Carlo simulations and allows the computation of the following properties characterizing the structure of the fluid: the fraction of molecules in the monomer or associated state, the fraction of each type of aggregate with a given size (and of molecules belonging to them), and the most probable and the average cluster size for each type. In addition, the degree of branching in branched linear chains and the type of ring in branched cyclic clusters can be obtained. In this work, all these quantities were computed for OPLS methanol using NpT Monte Carlo simulations at atmospheric pressure for 298.15 K (room conditions) and from 800 K to 350 K (gas phase), and along several supercritical isobars: 25, 50, 100, 200, and 500 MPa from 250 K to 1000 K. An analysis of the results has provided a comprehensive structural picture of methanol over the whole thermodynamic state space.
Related Concept Videos
Molecular Models
¹H NMR: Complex Splitting
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied first.
Preparation of Alcohols via Addition Reactions
The acid-catalyzed addition of water to the double bond of alkenes is a large-scale industrial method used to synthesize low-molecular-weight alcohols. An acidic atmosphere is required to allow the hydrogen in the water molecule to act as an electrophile and attack the double bond in an alkene. The addition of a proton to the double bond creates a carbocation intermediate. The proton preferentially bonds to the less substituted end of the double bond to create a more stable carbocation...
Regioselectivity and Stereochemistry of Acid-Catalyzed Hydration
Spin–Spin Coupling Constant: Overview
Qualitatively, any spin plus-half nucleus polarizes the spins of its electrons to the minus-half state. Consequently, the paired electron in the hydrogen–carbon bond must have a...
Structure of Benzene: Molecular Orbital Model

