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Updated: May 14, 2026

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Published on: July 18, 2025
Shallow breathing: bacterial life at low O(2)
Rachel L Morris1, Thomas M Schmidt
1Department of Microbiology and Molecular Genetics, 6180 Biomedical Physical Sciences, Michigan State University, East Lansing, Michigan 48824, USA.
Bacteria possess high-affinity enzymes enabling respiration in low-oxygen (microoxic) environments. These bacteria are diverse and widespread, impacting microbial communities and host-associated health and disease.
Area of Science:
- Microbiology
- Environmental Science
- Genomics
Background:
- Microorganisms compete intensely for molecular oxygen (O(2)) due to its role as a potent electron acceptor.
- This competition creates microoxic environments in various natural and host-associated communities.
- Bacteria utilize high-affinity terminal oxidases to scavenge O(2) at nanomolar concentrations.
Purpose of the Study:
- To survey bacterial genomes and metagenomes for genes encoding high-affinity terminal oxidases.
- To understand the prevalence and diversity of bacteria capable of microoxic respiration.
- To explore the implications of microaerobic metabolism in host-associated bacteria.
Main Methods:
- Genome sequencing analysis
- Shotgun metagenomic surveys
- Phylogenetic analysis of bacterial genes
Main Results:
- Identified a diverse range of bacteria possessing genes for high-affinity terminal oxidases.
- Demonstrated the widespread distribution of bacteria adapted to microoxic conditions across various environments.
- Highlighted the phylogenetic diversity of these microaerobic bacteria.
Conclusions:
- Bacteria with the capacity for microoxic respiration are phylogenetically diverse and globally distributed.
- Microaerobic metabolism plays a significant role in bacterial communities, particularly in host-associated settings.
- Findings underscore the importance of microaerobic respiration in microbial ecology, health, and disease.
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