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Updated: May 13, 2026

Imaging of Biological Tissues by Desorption Electrospray Ionization Mass Spectrometry
Published on: July 12, 2013
omniSpect: an open MATLAB-based tool for visualization and analysis of matrix-assisted laser desorption/ionization
R Mitchell Parry1, Asiri S Galhena, Chaminda M Gamage
1The Wallace H. Coulter Department of Biomedical Engineering, Emory University, Atlanta, GA 30332, USA.
Abstract:
We present omniSpect, an open source web- and MATLAB-based software tool for both desorption electrospray ionization (DESI) and matrix-assisted laser desorption ionization (MALDI) mass spectrometry imaging (MSI) that performs computationally intensive functions on a remote server. These functions include converting data from a variety of file formats into a common format easily manipulated in MATLAB, transforming time-series mass spectra into mass spectrometry images based on a probe spatial raster path, and multivariate analysis. OmniSpect provides an extensible suite of tools to meet the computational requirements needed for visualizing open and proprietary format MSI data.
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