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Updated: May 13, 2026

Identification of Transcription Factor Regulators using Medium-Throughput Screening of Arrayed Libraries and a Dual-Luciferase-Based Reporter
Published on: March 27, 2020
Targeting the Y/CCAAT box in cancer: YB-1 (YBX1) or NF-Y?
1Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, Milan 20133, Italy.
Abstract:
The Y box is an important sequence motif found in promoters and enhancers containing a CCAAT box - one of the few elements enriched in promoters of large sets of genes overexpressed in cancer. The search for the transcription factor(s) acting on it led to the biochemical purification of the nuclear factor Y (NF-Y) heterotrimer, and to the cloning - through the screening of expression libraries - of Y box-binding protein 1 (YB-1), an oncogene, overexpressed in aggressive tumors and associated with drug resistance. These two factors have been associated with Y/CCAAT-dependent activation of numerous growth-related genes, notably multidrug resistance protein 1. We review two decades of data indicating that NF-Y ultimately acts on Y/CCAAT in cancer cells, a notion recently confirmed by genome-wide data. Other features of YB-1, such as post-transcriptional control of mRNA biology, render it important in cancer biology.
Insights
Nuclear factor Y (NF-Y) and Y box-binding protein 1 (YB-1) are key transcription factors regulating genes in cancer. These factors are crucial for cancer cell growth and drug resistance, impacting numerous growth-related genes.
Area of Science:
- Molecular Biology
- Cancer Biology
- Genetics
Background:
- The Y box, a CCAAT box-containing motif, is enriched in promoters of cancer-overexpressed genes.
- Transcription factors Nuclear Factor Y (NF-Y) and Y box-binding protein 1 (YB-1) interact with the Y box.
- YB-1 is an oncogene overexpressed in aggressive tumors and linked to drug resistance.
Purpose of the Study:
- To review two decades of data on NF-Y and YB-1's roles in cancer.
- To highlight their involvement in Y/CCAAT-dependent gene activation.
- To emphasize YB-1's additional roles in post-transcriptional mRNA control in cancer.
Main Methods:
- Biochemical purification of NF-Y heterotrimer.
- Screening of expression libraries for YB-1 cloning.
- Review of existing scientific literature and genome-wide data.
Main Results:
- NF-Y and YB-1 are critical for activating growth-related genes in cancer cells, including multidrug resistance protein 1.
- Genome-wide data confirm NF-Y's action on Y/CCAAT sequences in cancer.
- YB-1 possesses functions beyond DNA binding, affecting mRNA biology.
Conclusions:
- NF-Y is a primary factor acting on Y/CCAAT in cancer cells.
- YB-1 is a significant oncogene with multifaceted roles in cancer biology, including drug resistance.
- Both NF-Y and YB-1 are crucial targets for understanding and potentially treating cancer.
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