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Updated: May 13, 2026

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Serial Block-Face Scanning Electron Microscopy (SBF-SEM) of Biological Tissue Samples
Published on: March 26, 2021
Automated in-chamber specimen coating for serial block-face electron microscopy.
1Department of Biomedical Optics, Max Planck Institute for Medical Research, Heidelberg, Germany.
Journal of Microscopy
|March 5, 2013
Summary
This study introduces an in-situ coating method for scanning electron microscopy (SEM) to prevent sample charging in serial block-face electron microscopy (SBEM). This technique enhances image quality and enables new imaging modes for insulating specimens.
Area of Science:
- Materials Science
- Microscopy Techniques
- Nanotechnology
Background:
- Insulating specimens in scanning electron microscopy (SEM) suffer from sample charging, distorting images.
- Traditional conductive coating methods are incompatible with serial block-face electron microscopy (SBEM) due to the in-situ cutting and imaging process.
Purpose of the Study:
- To develop a method to eliminate charging effects in SBEM for insulating samples.
- To improve image quality and enable advanced imaging modes in SBEM.
Main Methods:
- Integrated an electron beam evaporator into the SEM chamber for in-situ metallic film coating (1-2 nm) after each cutting cycle.
- Automated the coating process for serial acquisition of SBEM stacks.
- Utilized beam deceleration for enhanced contrast on non-conducting samples.
Main Results:
- Successfully eliminated charging effects for both backscattered (BSE) and secondary electron (SE) imaging on samples up to 12 mm.
- Observed minimal signal-to-noise ratio (SNR) reduction compared to low-vacuum methods.
- Demonstrated acquisition of over 1000 cut/coat/image cycles and successful imaging using beam deceleration and SE contrast.
Conclusions:
- In-situ coating is a viable solution for charging artifacts in SBEM.
- This method preserves sample integrity and enhances imaging capabilities for insulating materials.
- The automated process facilitates high-resolution 3D reconstructions of challenging specimens.

