The Citrobacter rodentium mouse model: studying pathogen and host contributions to infectious colitis
Related Experiment Video
Updated: May 13, 2026

The Citrobacter rodentium Mouse Model: Studying Pathogen and Host Contributions to Infectious Colitis
Published on: February 19, 2013
Ganive Bhinder1, Ho Pan Sham, Justin M Chan
1Division of Gastroenterology, BC Children's Hospital, Canada.
Abstract:
This protocol outlines the steps required to produce a robust model of infectious disease and colitis, as well as the methods used to characterize Citrobacter rodentium infection in mice. C. rodentium is a gram negative, murine specific bacterial pathogen that is closely related to the clinically important human pathogens enteropathogenic E. coli and enterohemorrhagic E. coli. Upon infection with C. rodentium, immunocompetent mice suffer from modest and transient weight loss and diarrhea. Histologically, intestinal crypt elongation, immune cell infiltration, and goblet cell depletion are observed. Clearance of infection is achieved after 3 to 4 weeks. Measurement of intestinal epithelial barrier integrity, bacterial load, and histological damage at different time points after infection, allow the characterization of mouse strains susceptible to infection. The virulence mechanisms by which bacterial pathogens colonize the intestinal tract of their hosts, as well as specific host responses that defend against such infections are poorly understood. Therefore the C. rodentium model of enteric bacterial infection serves as a valuable tool to aid in our understanding of these processes. Enteric bacteria have also been linked to Inflammatory Bowel Diseases (IBDs). It has been hypothesized that the maladaptive chronic inflammatory responses seen in IBD patients develop in genetically susceptible individuals following abnormal exposure of the intestinal mucosal immune system to enteric bacteria. Therefore, the study of models of infectious colitis offers significant potential for defining potentially pathogenic host responses to enteric bacteria. C. rodentium induced colitis is one such rare model that allows for the analysis of host responses to enteric bacteria, furthering our understanding of potential mechanisms of IBD pathogenesis; essential in the development of novel preventative and therapeutic treatments.
Insights
This study details a mouse model for infectious colitis using Citrobacter rodentium. This model helps understand enteric bacterial infections and their link to Inflammatory Bowel Diseases (IBD).
Area of Science:
- Microbiology
- Immunology
- Gastroenterology
Background:
- Citrobacter rodentium is a murine pathogen related to human E. coli strains.
- Enteric bacteria are implicated in the pathogenesis of Inflammatory Bowel Diseases (IBD).
- Understanding host-pathogen interactions is crucial for IBD research.
Purpose of the Study:
- To establish and characterize a robust mouse model of infectious colitis using C. rodentium.
- To investigate host responses to enteric bacterial infection.
- To explore the relevance of infectious colitis models for understanding IBD.
Main Methods:
- Infection of immunocompetent mice with C. rodentium.
- Monitoring of clinical signs (weight loss, diarrhea) and histological changes (crypt elongation, immune infiltration, goblet cell depletion).
- Assessment of intestinal epithelial barrier integrity, bacterial load, and tissue damage over time.
Main Results:
- Mice exhibit transient weight loss and diarrhea post-infection.
- Characteristic histological changes in the colon are observed.
- The model allows for the characterization of susceptible mouse strains and analysis of host responses.
Conclusions:
- The C. rodentium colitis model is a valuable tool for studying enteric bacterial pathogenesis and host defense mechanisms.
- This model provides insights into potential mechanisms of IBD development.
- Further research using this model can aid in developing novel treatments for IBD.

