Related Experiment Video
Updated: May 13, 2026

09:45
Modification and Functionalization of the Guanidine Group by Tailor-made Precursors
Published on: April 27, 2017
5-(Trifluoro-meth-oxy)isatin
M Schutte1, C Pretorius, H G Visser
1Department of Chemistry, University of the Free State, PO Box 339, Bloemfontein, 9301, South Africa.
Acta Crystallographica. Section E, Structure Reports Online
|March 12, 2013
Summary
This study details the crystal structure of 5-(trifluoro-methoxy)-1H-indole-2,3-dione. The compound forms layered structures through intermolecular hydrogen bonds and exhibits pi-pi stacking interactions.
Area of Science:
- Crystallography
- Organic Chemistry
- Materials Science
Background:
- Isatin derivatives are important scaffolds in medicinal chemistry.
- Understanding the solid-state structure of functionalized isatins is crucial for material design.
Purpose of the Study:
- To determine the crystal structure of 5-(trifluoro-methoxy)-1H-indole-2,3-dione.
- To investigate the intermolecular interactions governing its solid-state packing.
Main Methods:
- Single-crystal X-ray diffraction analysis.
- Analysis of intermolecular interactions including hydrogen bonding and pi-pi stacking.
Main Results:
- The compound crystallized with two molecules in the asymmetric unit.
- Intermolecular N-H⋯O hydrogen bonds form layers parallel to the ab plane.
- Pi-pi stacking interactions were observed with a centroid-centroid distance of 3.721 Å.
Conclusions:
- The crystal structure reveals a layered arrangement driven by hydrogen bonding.
- The near planarity of the isatin ring systems facilitates pi-pi stacking.
- This structural information is valuable for designing related organic materials.
Related Concept Videos
Inhibitors of Bacterial DNA Synthesis
Bacterial pathogens depend on precise and efficient DNA replication to sustain infection. Two type II topoisomerases—DNA gyrase and topoisomerase IV—are critical to this process, as they resolve DNA supercoiling and unlink chromosomes during replication. Fluoroquinolones, synthetic derivatives of quinolones, exploit this mechanism by stabilizing the transient DNA–enzyme cleavage complex, preventing strand religation, and causing lethal double-strand breaks. These antibiotics are selectively...
Eukaryotic Transcription Inhibitors
Certain biochemical processes, such as embryonic development and cell growth regulation, depend on the repression of specific genes. DNA binding proteins known as eukaryotic transcription inhibitors regulate the repression of gene expression in eukaryotes. The presence of these inhibitors at the required location and time in the cell is triggered by the presence of hormones and additional signals from other cells.
Eukaryotic transcription inhibitors usually contain two distinct domains, a DNA...
Eukaryotic transcription inhibitors usually contain two distinct domains, a DNA...
Structure and Nomenclature of Thiols and Sulfides
Thiols and sulfides are sulfur analogs of alcohols and ethers, respectively, where the sulfur atom takes the place of the oxygen atom. Thus, thiols are generally represented as RSH, where R is an alkyl substituent and —SH is the functional group. On the other hand, in sulfides, the central sulfur atom is bonded to two hydrocarbon groups on either side. Depending upon the type of group, sulfides can be either symmetrical or asymmetrical. Both thiols and sulfides display a bent geometry, similar...

