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Updated: May 13, 2026

A High Resolution Method to Monitor Phosphorylation-dependent Activation of IRF3
Published on: January 24, 2016
Human DEAD box helicase 3 couples IκB kinase ε to interferon regulatory factor 3 activation
Lili Gu1, Anthony Fullam, Ruth Brennan
1National University of Ireland Maynooth, Maynooth, County Kildare, Ireland.
Abstract:
The human DEAD box protein 3 (DDX3) has been implicated in different processes contributing to gene expression. Interestingly, DDX3 is required as an essential host factor for the replication of HIV and hepatitis C virus (HCV) and is therefore considered a potential drug target. On the other hand, DDX3 interacts with IκB kinase ε (IKKε) and TANK-binding kinase 1 (TBK1) and contributes to the induction of antiviral type I interferons (IFNs). However, the molecular mechanism by which DDX3 contributes to IFN induction remains unclear. Here we show that DDX3 mediates phosphorylation of interferon regulatory factor 3 (IRF3) by the kinase IKKε. DDX3 directly interacts with IKKε and enhances its autophosphorylation and activation. IKKε then phosphorylates several serine residues in the N terminus of DDX3. Phosphorylation of DDX3 at serine 102 (S102) is required for recruitment of IRF3 to DDX3, facilitating its phosphorylation by IKKε. Mutation of S102 to alanine disrupted the interaction between DDX3 and IRF3 but not that between DDX3 and IKKε. The S102A mutation failed to enhance ifnb promoter activation, suggesting that the DDX3-IRF3 interaction is crucial for this effect. Our data implicates DDX3 as a scaffolding adaptor that directly facilitates phosphorylation of IRF3 by IKKε. DDX3 might thus be involved in pathway-specific activation of IRF3.
Insights
The DEAD box protein 3 (DDX3) acts as a scaffold, linking IκB kinase ε (IKKε) to interferon regulatory factor 3 (IRF3). This interaction is crucial for DDX3-mediated IRF3 phosphorylation and antiviral type I interferon (IFN) induction.
Area of Science:
- Molecular biology
- Virology
- Immunology
Background:
- The DEAD box protein 3 (DDX3) is a host factor essential for HIV and HCV replication and a potential drug target.
- DDX3 interacts with IκB kinase ε (IKKε) and TANK-binding kinase 1 (TBK1), contributing to type I interferon (IFN) induction.
- The precise molecular mechanism of DDX3 in IFN induction is not fully understood.
Purpose of the Study:
- To elucidate the molecular mechanism by which DDX3 facilitates type I IFN induction.
- To investigate the role of DDX3 in the phosphorylation of interferon regulatory factor 3 (IRF3) by IKKε.
Main Methods:
- Co-immunoprecipitation assays to study protein interactions.
- Site-directed mutagenesis to investigate the role of specific serine residues.
- Reporter gene assays to assess promoter activation.
Main Results:
- DDX3 directly interacts with and enhances the activation of IKKε.
- Phosphorylation of DDX3 at serine 102 (S102) is essential for recruiting IRF3.
- The DDX3-IRF3 interaction, mediated by S102 phosphorylation, is critical for IFN-β promoter activation.
Conclusions:
- DDX3 functions as a scaffolding adaptor, directly facilitating IRF3 phosphorylation by IKKε.
- DDX3 plays a key role in the pathway-specific activation of IRF3, contributing to innate antiviral responses.
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