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Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Structural analysis of the regulation of the DYNLL/LC8 binding to Nek9 by phosphorylation
Pablo Gallego1, Adrian Velazquez-Campoy, Laura Regué
1Structural Biology Unit, Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain.
Abstract:
The NIMA family protein kinases Nek9/Nercc1, Nek6, and Nek7 constitute a signaling module activated in early mitosis involved in the control of spindle organization. DYNLL/LC8 (dynein light chain 8) was originally described as a component of the dynein complex, but the recent discovery of multiple interaction partners for LC8 has suggested that it has a general role as a dimerization hub that organizes different protein partners. Recent experiments suggested that LC8 binding to Nek9 was regulated by Nek9 autophosphorylation on Ser(944), a residue immediately located N-terminal to the LC8 conserved (K/R)xTQT binding motif, and that this was crucial for the control of signal transduction through the Nek/Nek6/7 module. In the present work, we present two crystal structures of LC8 with a peptide corresponding to the Nek9 binding region with and without a phosphorylation on Ser(944). Structural analysis of LC8 with both Nek9 peptides, together with different biophysical experiments, explains the observed diminished binding affinity of Nek9 to LC8 upon phosphorylation on Ser(944) within the Nek9 sequence, thus shedding light into a novel phosphorylation regulatory mechanism that interferes with LC8 protein · protein complex formation.
Insights
Phosphorylation of Nek9 protein on Ser(944) disrupts its binding to dynein light chain 8 (LC8). This novel regulatory mechanism impacts cell division signaling and protein complex formation.
Area of Science:
- Cell Biology
- Molecular Biology
- Structural Biology
Background:
- The NIMA family kinases (Nek9, Nek6, Nek7) regulate mitotic spindle organization.
- Dynein light chain 8 (LC8) acts as a dimerization hub, binding to various protein partners.
- LC8 binding to Nek9 is critical for the Nek/Nek6/7 signaling module.
Purpose of the Study:
- To elucidate the structural basis for LC8 binding to Nek9.
- To investigate the regulatory role of Nek9 phosphorylation on LC8 interaction.
- To understand the impact of this regulation on cell signaling.
Main Methods:
- X-ray crystallography of LC8 with Nek9 peptides (phosphorylated and unphosphorylated).
- Biophysical experiments to quantify binding affinities.
- Structural analysis of protein-protein interactions.
Main Results:
- Two crystal structures reveal LC8 bound to Nek9 peptides.
- Phosphorylation of Nek9 at Ser(944) significantly reduces its binding affinity to LC8.
- Structural and biophysical data explain this diminished interaction.
Conclusions:
- A novel phosphorylation-dependent mechanism regulates Nek9-LC8 complex formation.
- This regulation impacts signal transduction in the Nek/Nek6/7 pathway.
- Findings provide insights into LC8's role as a versatile protein interaction hub.
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