Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Transition State Theory01:25

Transition State Theory

Transition-state theory, also known as activated-complex theory, provides a molecular-level explanation of reaction rates in both gas-phase and solution-phase reactions. It extends earlier kinetic models by considering the formation of a short-lived, high-energy configuration during a reaction.The progress of a chemical reaction can be represented using a reaction profile, which plots potential energy against the reaction coordinate. As two reactant molecules approach one another, their...
¹H NMR: Interpreting Distorted and Overlapping Signals01:02

¹H NMR: Interpreting Distorted and Overlapping Signals

Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are slanted or...
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
Free Energy Changes for Nonstandard States03:25

Free Energy Changes for Nonstandard States

The free energy change for a process taking place with reactants and products present under nonstandard conditions (pressures other than 1 bar; concentrations other than 1 M) is related to the standard free energy change according to this equation:

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Automated High-Throughput Virtual Screening of Catalysts via Templated Organic Reaction Pathway Construction: A Case Study on Suzuki-Miyaura Coupling Reaction.

Journal of the American Chemical Society·2026
Same author

A review of <i>Rhododendron molle</i>: traditional uses, clinical applications, phytochemistry, pharmacology, toxicology, pharmacokinetics and quality control.

Frontiers in pharmacology·2026
Same author

Chromosome-Level Genome Assembly of <i>Morchella sextelata</i> Reveals Its Early Divergence and Adaptive Evolution.

Journal of fungi (Basel, Switzerland)·2026
Same author

Decoupling the Effects of Ion Gating from Photoinduced Quasi-Fermi Level Splitting at Photoelectrochemical Interfaces.

ACS applied materials & interfaces·2026
Same author

Activation of the RAS/PPARα pathway reduces backfat deposition of Gayal (Bos frontalis).

BMC genomics·2026
Same author

Slow cooling and efficient extraction of hot carriers in perovskite films <i>via</i> engineering trap-mediated relaxation channels.

Chemical science·2026
Same journal

A data-driven modeling study on the accurate identification of Doppler-free saturated absorption spectra in diatomic tellurium (130Te2).

The Journal of chemical physics·2026
Same journal

Anharmonic phonons via quantum thermal bath simulations.

The Journal of chemical physics·2026
Same journal

Quantum simulation of alignment dependent differential cross sections in co-propagating molecular beams at cold collision energies.

The Journal of chemical physics·2026
Same journal

Non-additive ion effects on the coil-globule equilibrium of a generic polymer in aqueous salt solutions.

The Journal of chemical physics·2026
Same journal

Insights into the unexpected small reduction of the temperature of maximum density of water by lithium chloride addition.

The Journal of chemical physics·2026
Same journal

Optical frequency comb double-resonance spectroscopy of the 9030-9175 cm-1 states of ethylene.

The Journal of chemical physics·2026
See all related articles

Related Experiment Video

Updated: May 13, 2026

Experimental and Data Analysis Workflow for Soft Matter Nanoindentation
13:04

Experimental and Data Analysis Workflow for Soft Matter Nanoindentation

Published on: January 18, 2022

Efficient softest mode finding in transition states calculations.

Jing Leng1, Weiguo Gao, Cheng Shang

  • 1School of Mathematical Sciences, MOE Laboratory of Mathematics for Nonlinear Science, Fudan University, Shanghai 200433, China.

The Journal of Chemical Physics
|March 15, 2013
PubMed
Summary
This summary is machine-generated.

This study introduces a new algorithm, LOR, for finding transition states in chemical reactions. LOR significantly speeds up reaction dynamics calculations compared to existing methods.

More Related Videos

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
05:51

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method

Published on: July 19, 2019

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry
16:11

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry

Published on: June 8, 2022

Related Experiment Videos

Last Updated: May 13, 2026

Experimental and Data Analysis Workflow for Soft Matter Nanoindentation
13:04

Experimental and Data Analysis Workflow for Soft Matter Nanoindentation

Published on: January 18, 2022

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
05:51

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method

Published on: July 19, 2019

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry
16:11

Thermochemical Studies of Ni(II) and Zn(II) Ternary Complexes Using Ion Mobility-Mass Spectrometry

Published on: June 8, 2022

Area of Science:

  • Chemical Physics
  • Computational Chemistry

Background:

  • Transition states are crucial for understanding chemical reaction dynamics.
  • Current methods for locating transition states often require Hessian matrix calculations or have unpredictable computational costs.

Purpose of the Study:

  • To develop a more efficient and numerically stable algorithm for first-principle transition state location.
  • To address the limitations of existing softest-mode following methods.

Main Methods:

  • Introduction of the locally optimal search direction finding algorithm (LOR).
  • LOR extends the conjugate gradient method without requiring additional force calculations.
  • Demonstration of improved numerical stability through force translation.

Main Results:

  • The LOR algorithm demonstrates significantly faster performance compared to the original dimer conjugate gradient method.
  • Experiments on the Baker test system validate the efficiency of LOR.
  • The proposed method enhances numerical stability.

Conclusions:

  • The LOR algorithm offers a more efficient approach to transition state location in chemical physics.
  • This method provides a valuable alternative for studying reaction dynamics.
  • LOR improves upon existing techniques by enhancing speed and numerical stability.