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Updated: May 13, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
DNA methyltransferase-1 inhibitors as epigenetic therapy for cancer
Varinder Singh1, Prince Sharma, Neena Capalash
1Department of Biotechnology, Panjab University, Chandigarh, India.
Abstract:
DNA methylation is an epigenetic modification involved in gene expression regulation. In cancer, the DNA methylation pattern becomes aberrant, causing an array of tumor suppressor genes to undergo promoter hypermethylation and become transcriptionally silent. Reexpression of methylation silenced tumor suppressor genes by inhibiting the DNA methyltransferases (DNMT1, DNMT3A, and DNMT3B) has emerged as an effective strategy against cancer. The expression of DNA methyltransferase 1 (DNMT1) being high in S-phase of cell cycle makes it a specific target for methylation inhibition in rapidly dividing cells as in cancer. This review discusses nucleoside analogues (azacytidine, decitabine, zebularine, SGI-110, CP-4200), non-nucleoside ihibitors both synthetic (hydralazine, RG108, procaine, procainamide, IM25, disulfiram) and natural compounds (curcumin, genistein, EGCG, resveratrol, equol, parthenolide) which act through different mechanisms to inhibit DNMTs. The issues of bioavailability, toxicity, side effects, hypomethylation resistance and combinatorial therapies have also been highlighted.
Insights
Inhibiting DNA methyltransferases (DNMTs) can re-express silenced tumor suppressor genes in cancer. This review covers various DNMT inhibitors, including nucleoside analogues and natural compounds, for cancer therapy.
Area of Science:
- Epigenetics
- Cancer Biology
- Pharmacology
Background:
- Aberrant DNA methylation patterns in cancer silence tumor suppressor genes.
- DNA methyltransferases (DNMTs) regulate gene expression through methylation.
- DNMT1 is a key target due to its high expression in the S-phase of the cell cycle.
Purpose of the Study:
- To review current strategies for inhibiting DNA methyltransferases (DNMTs) in cancer.
- To discuss various classes of DNMT inhibitors, including nucleoside analogues and non-nucleoside compounds.
- To highlight challenges and future directions in DNMT inhibition therapy.
Main Methods:
- Comprehensive literature review of nucleoside analogues and non-nucleoside inhibitors of DNMTs.
- Categorization of inhibitors into synthetic and natural compounds.
- Discussion of mechanisms of action, bioavailability, toxicity, and resistance.
Main Results:
- Identified nucleoside analogues (e.g., azacytidine, decitabine) and synthetic non-nucleoside inhibitors (e.g., hydralazine, RG108).
- Highlighted natural compounds (e.g., curcumin, genistein, EGCG, resveratrol) with DNMT inhibitory potential.
- Discussed challenges such as bioavailability, toxicity, and resistance to hypomethylation therapies.
Conclusions:
- DNMT inhibition is a promising strategy for cancer treatment by re-expressing silenced tumor suppressor genes.
- A diverse range of compounds, both synthetic and natural, show potential as DNMT inhibitors.
- Addressing challenges like toxicity and resistance is crucial for developing effective combinatorial therapies.
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