The foamy virus Gag proteins: what makes them different?
1Department of Cell and Molecular Biology, Karolinska Institutet, SE-17177 Stockholm, Sweden. erik.mullers@ki.se
Viruses
|March 28, 2013
Summary
Foamy virus (FV) Gag proteins have unique structures, lacking typical retroviral domains but possessing distinct features. This review details these unique FV Gag properties and their functions in viral replication.
Area of Science:
- Virology
- Molecular Biology
- Structural Biology
Background:
- Gag proteins are crucial for retroviral replication, influencing assembly, host interactions, gene expression, and trafficking.
- Foamy Viruses (FVs), or spumaviruses, exhibit unique retroviral characteristics.
- FV Gag proteins differ significantly from orthoretroviral Gag proteins.
Purpose of the Study:
- To summarize known Foamy Virus (FV) Gag protein domains and motifs.
- To elucidate the functions of FV Gag domains and motifs.
- To highlight the unique structural and functional properties of FV Gag proteins compared to orthoretroviral Gag proteins.
Main Methods:
- Literature review of Foamy Virus (FV) Gag protein research.
- Comparative analysis of FV Gag proteins and orthoretroviral Gag proteins.
- Functional domain and motif identification.
Main Results:
- FV Gag proteins lack orthoretroviral domains (M, MHR, Cys-His motifs).
- FV Gag proteins possess distinct domains, including Gag-Env interaction and glycine-arginine rich (GR) boxes.
- FV Gag exhibits limited maturation and an unusual nuclear translocation pathway.
Conclusions:
- FV Gag proteins possess unique structural and functional attributes differentiating them from orthoretroviral Gag proteins.
- These unique properties contribute to the distinct biology of Foamy Viruses.
- Further research into FV Gag can offer insights into retroviral diversity.
Related Concept Videos
Viral Structure
Viruses are extraordinarily diverse in shape and size, but they all have several structural features in common. All viruses have a core that contains a DNA- or RNA-based genome. The core is surrounded by a protective coat of proteins called the capsid. The capsid is composed of subunits called capsomeres. The capsid and genome-containing core are together known as the nucleocapsid.
Leaky Scanning
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
Size and Structure of Viral Genomes
Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
Viruses with RNA Genomes
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
Subviral Agents
Subviral agents are infectious entities that resemble viruses but lack one or more viral components, such as a capsid or essential replication machinery. These agents include viroids, prions, and satellites, each possessing distinct structural and functional characteristics that influence their mode of infection and replication.Viroids are the simplest subviral agents, consisting of circular, single-stranded RNA molecules without a protein coat. They exclusively infect plants, relying entirely...
What are Viruses?
Overview


