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Antibiotic Selection00:57

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Microbial genome evolution is a highly dynamic process shaped by continual gene gain and loss across species and strains. This genomic flexibility allows microorganisms to adapt rapidly to environmental pressures and interactions with other organisms. Central to understanding this diversity is the distinction between the core and pan genomes.The core genome comprises the genes shared by all sampled strains of a species, representing essential functions needed for fundamental cellular processes.
Genome-wide Association Studies-GWAS01:11

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When the fitness of a trait is influenced by how common it is (i.e., its frequency) relative to different traits within a population, this is referred to as frequency-dependent selection. Frequency-dependent selection may occur between species or within a single species. This type of selection can either be positive—with more common phenotypes having higher fitness—or negative, with rarer phenotypes conferring increased fitness.
Transduction01:16

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Among the three main modes of HGT—transformation, conjugation, and transduction—transduction is unique in that it is mediated by bacteriophages, or bacterial viruses.Transduction occurs in two ways. Generalized transduction occurs during the lytic cycle of a bacteriophage infection. In this process, bacteriophages infect bacterial cells, replicate within them, and ultimately cause cell lysis, releasing newly assembled virions. Occasionally, random fragments of the bacterial genome are...
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Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
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Published on: June 21, 2018

Pathogen-driven selection in the human genome.

Rachele Cagliani1, Manuela Sironi

  • 1Bioinformatics, Scientific Institute IRCCS E. Medea, 23842 Bosisio Parini (LC), Italy.

International Journal of Evolutionary Biology
|March 28, 2013
PubMed
Summary
This summary is machine-generated.

Infectious diseases have profoundly shaped human genetic diversity, acting as a major evolutionary selective pressure. Understanding these pathogen-host interactions can reveal genetic factors influencing disease susceptibility and inform new treatments.

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Area of Science:

  • Evolutionary biology
  • Human genetics
  • Pathogen-host interactions

Background:

  • Infectious diseases have historically been a primary cause of mortality, contributing to approximately 15% of global deaths even today.
  • The impact of infectious diseases as a selective pressure on human evolution has been increasingly recognized with advances in genetic data and molecular evolution studies.
  • Pathogen load is identified as a significant factor influencing human genetic diversity, surpassing other environmental selective pressures.

Purpose of the Study:

  • To assess the pervasive influence of infectious agents on human genetic diversity.
  • To identify genetic signatures of pathogen-exerted selective pressure across the human genome.
  • To explore the evolutionary relationships between human hosts and pathogens.

Main Methods:

  • Analysis of large-scale genetic data.
  • Application of novel methods in molecular evolution studies.
  • Identification of selection signatures at various human genetic loci.

Main Results:

  • Evidence indicates that pathogen load has been the strongest selective pressure shaping human evolution.
  • Selection signatures are observable not only in immune-related genes like the major histocompatibility complex but also in other human genes.
  • Pathogen-driven selection has pervasively influenced human genetic diversity.

Conclusions:

  • Infectious diseases have played a critical role in human evolution, leaving detectable genetic footprints.
  • Future research using high-throughput technologies and diverse population data will enhance understanding of host-pathogen co-evolution.
  • Identifying genetic determinants of infectious disease susceptibility holds promise for developing novel therapeutic strategies.