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The microaerophilic microbiota of de-novo paediatric inflammatory bowel disease: the BISCUIT study
Richard Hansen1, Susan H Berry, Indrani Mukhopadhya
1Gastrointestinal Research Group, Division of Applied Medicine, University of Aberdeen, Foresterhill, Aberdeen, United Kingdom.
Insights
This study investigated microaerophilic bacteria in children with new-onset inflammatory bowel disease (IBD). Campylobacter and Sutterella wadsworthensis were common, but not significantly linked to IBD, while Helicobacter was rare.
Area of Science:
- Microbiology
- Gastroenterology
- Paediatric Medicine
Background:
- Investigating aetiological agents in new-onset pediatric inflammatory bowel disease (IBD) is crucial before treatment confounders arise.
- Microaerophilic bacteria, such as Helicobacter and Campylobacter, are potential contributors to IBD pathogenesis.
- This study focuses on identifying these bacteria in treatment-naïve children with de-novo IBD.
Purpose of the Study:
- To comprehensively analyze the microaerophilic bacterial microbiota in the pediatric colon at the onset of IBD.
- To determine the prevalence and association of specific microaerophilic bacteria (Helicobacteraceae, Campylobacteraceae, Sutterella wadsworthensis) with de-novo pediatric IBD.
Main Methods:
- Recruited 100 children, including 44 treatment-naïve de-novo IBD patients and 42 with normal colons, undergoing colonoscopy.
- Collected colonic biopsies for microaerophilic culture and identification of Gram-negative isolates via sequencing.
- Performed PCR screening for Helicobacteraceae, Campylobacteraceae, and Sutterella wadsworthensis.
Main Results:
- Identified 129 Gram-negative microaerophilic isolates from 10 genera, with Sutterella wadsworthensis being most frequent.
- Isolated unusual Campylobacter species from 8 subjects; no Helicobacter species were cultured.
- PCR screening revealed no significant difference in the prevalence of Helicobacter, Campylobacter, or S. wadsworthensis between IBD patients and controls.
Conclusions:
- Campylobacter species are common in the pediatric colon (around 8% of biopsies) but not strongly associated with IBD onset.
- Sutterella wadsworthensis is identified as a common commensal bacterium in the pediatric gut.
- Helicobacter species are relatively rare in the pediatric colon, suggesting a limited role in de-novo IBD pathogenesis.
Introduction:
Children presenting for the first time with inflammatory bowel disease (IBD) offer a unique opportunity to study aetiological agents before the confounders of treatment. Microaerophilic bacteria can exploit the ecological niche of the intestinal epithelium; Helicobacter and Campylobacter are previously implicated in IBD pathogenesis. We set out to study these and other microaerophilic bacteria in de-novo paediatric IBD.
Patients And Methods:
100 children undergoing colonoscopy were recruited including 44 treatment naïve de-novo IBD patients and 42 with normal colons. Colonic biopsies were subjected to microaerophilic culture with Gram-negative isolates then identified by sequencing. Biopsies were also PCR screened for the specific microaerophilic bacterial groups: Helicobacteraceae, Campylobacteraceae and Sutterella wadsworthensis.
Results:
129 Gram-negative microaerophilic bacterial isolates were identified from 10 genera. The most frequently cultured was S. wadsworthensis (32 distinct isolates). Unusual Campylobacter were isolated from 8 subjects (including 3 C. concisus, 1 C. curvus, 1 C. lari, 1 C. rectus, 3 C. showae). No Helicobacter were cultured. When comparing IBD vs. normal colon control by PCR the prevalence figures were not significantly different (Helicobacter 11% vs. 12%, p = 1.00; Campylobacter 75% vs. 76%, p = 1.00; S. wadsworthensis 82% vs. 71%, p = 0.312).
Conclusions:
This study offers a comprehensive overview of the microaerophilic microbiota of the paediatric colon including at IBD onset. Campylobacter appear to be surprisingly common, are not more strongly associated with IBD and can be isolated from around 8% of paediatric colonic biopsies. S. wadsworthensis appears to be a common commensal. Helicobacter species are relatively rare in the paediatric colon.
Trial Registration:
This study is publically registered on the United Kingdom Clinical Research Network Portfolio (9633).
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