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Updated: May 12, 2026

In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
Polyubiquitination and proteasomal turnover controls the anti-apoptotic activity of Bcl-B
B van de Kooij1, R W Rooswinkel, F Kok
1Division of Immunology, The Netherlands Cancer Institute-Antoni van Leeuwenhoek Hospital, Amsterdam, The Netherlands.
Abstract:
Anti-apoptotic Bcl-2 family members can contribute to tumorigenesis and may convey resistance to anti-cancer regimens. Therefore, they are important targets for novel therapeutics, particularly Bcl-2 homology (BH)3 mimetics. Bcl-B (BCL-2-like protein-10) is a relatively understudied member of the Bcl-2 protein family. Its physiological function is unknown, but it has been proven to have an anti-apoptotic activity and to act as a tumor promoter in mice. In human, high Bcl-B protein expression levels correlate with poor prognosis in various carcinomas and predict treatment resistance in acute myeloid leukemia. We here report that protein expression level and anti-apoptotic activity of Bcl-B are dictated by its ubiquitination. We demonstrate that Bcl-B is polyubiquitinated at steady state, in a unique loop between the BH1 and BH2 domains. Mutagenesis identified lysine (K)128 as an acceptor site for polyubiquitin chains, and K119 and K120, but not K181, as potential ubiquitination sites. Mass spectrometry confirmed K128 as a ubiquitination site and defined the polyubiquitin chains as K48-linked, which was confirmed by linkage-specific antibodies. Accordingly, Bcl-B proved to be an instable protein that is subject to ubiquitin-dependent proteasomal degradation at steady state. At equal mRNA expression, protein expression of a lysineless, nonubiquitinated Bcl-B mutant was fivefold higher than that of wild-type Bcl-B, demonstrating that ubiquitination is a key determinant for Bcl-B protein expression levels. Ubiquitination controlled the anti-apoptotic capacity of Bcl-B, in response to a variety of conventional and novel anti-cancer drugs. Certain anti-cancer drugs, known to reduce Mcl-1 protein levels, likewise downregulated Bcl-B. Together, these data demonstrate that polyubiquitination and proteasomal turnover dictate the expression level and anti-apoptotic capacity of Bcl-B.
Insights
Polyubiquitination controls the stability and anti-apoptotic function of Bcl-B (BCL-2-like protein-10). This process dictates Bcl-B protein levels, impacting cancer prognosis and treatment resistance.
Area of Science:
- Molecular Biology
- Cancer Biology
- Protein Biochemistry
Background:
- Anti-apoptotic Bcl-2 family proteins promote tumorigenesis and cancer treatment resistance.
- Bcl-B (BCL-2-like protein-10) is an understudied Bcl-2 family member with demonstrated anti-apoptotic activity and tumor-promoting roles.
- High Bcl-B expression correlates with poor prognosis in carcinomas and predicts treatment resistance in acute myeloid leukemia.
Purpose of the Study:
- To investigate the regulatory mechanisms governing Bcl-B protein expression and anti-apoptotic activity.
- To determine the role of ubiquitination in controlling Bcl-B stability and function.
- To elucidate the impact of Bcl-B regulation on cancer treatment.
Main Methods:
- Ubiquitination analysis using mutagenesis and mass spectrometry.
- Assessment of protein stability via proteasomal degradation assays.
- Quantification of Bcl-B protein levels in response to anti-cancer drugs.
- Utilized linkage-specific antibodies to confirm ubiquitin chain type.
Main Results:
- Bcl-B is polyubiquitinated at K128, forming K48-linked chains, leading to proteasomal degradation.
- Ubiquitination is a key determinant of Bcl-B protein expression levels, with a non-ubiquitinated mutant showing a fivefold increase in protein levels.
- Ubiquitination regulates the anti-apoptotic capacity of Bcl-B in response to various anti-cancer drugs.
- Certain anti-cancer drugs that reduce Mcl-1 also downregulate Bcl-B.
Conclusions:
- Polyubiquitination and subsequent proteasomal turnover are critical regulators of Bcl-B protein expression and anti-apoptotic function.
- Understanding Bcl-B ubiquitination provides insights into cancer development and therapeutic resistance.
- Targeting Bcl-B ubiquitination pathways may offer novel strategies for cancer therapy.
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