Related Experiment Video
Updated: May 12, 2026

11:36
In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
The ubiquitin code and its decoding machinery in the endocytic pathway
Hidetaka Tanno1, Masayuki Komada
1Department of Biological Sciences, Tokyo Institute of Technology, Yokohama 226-8501, Japan.
Journal of Biochemistry
|April 9, 2013
Summary
Cellular ubiquitination (Ub) targets plasma membrane proteins for degradation. This review details how specific ubiquitin modifications signal protein internalization and transport to lysosomes for breakdown.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Plasma membrane protein levels must be tightly regulated for cellular function.
- Cells employ endocytosis and lysosomal degradation to rapidly reduce specific surface protein levels.
- Lysosomal degradation is crucial for cellular homeostasis and protein turnover.
Purpose of the Study:
- To review the mechanisms of ubiquitination in plasma membrane protein regulation.
- To elucidate the role of ubiquitin modifications in endocytosis and lysosomal trafficking.
- To discuss the recognition of ubiquitin signals by ubiquitin-binding proteins.
Main Methods:
- This review synthesizes existing research on protein ubiquitination and cellular trafficking.
- It analyzes the signaling pathways involved in endosome-to-lysosome transport.
- Literature review focusing on ubiquitin-binding proteins and their functions.
Main Results:
- Ubiquitination acts as a critical signal for the internalization of plasma membrane proteins.
- Specific ubiquitin modifications dictate the transport of proteins through endosomal compartments to the lysosome.
- Ubiquitin-binding proteins are key mediators in recognizing and processing these ubiquitination signals.
Conclusions:
- Ubiquitination is a central regulatory mechanism for controlling plasma membrane protein abundance.
- Understanding ubiquitination pathways provides insights into cellular protein homeostasis and degradation.
- Targeting ubiquitination pathways could offer therapeutic strategies for diseases involving protein misregulation.
Related Concept Videos
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Regulated Protein Degradation
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Regulated Protein Degradation
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
ER Retrieval Pathway
In the secretory pathway, vesicles transport proteins from one cellular compartment to another in forward transport to deliver the protein to its correct location. Occasionally, misfolded proteins and incorrect proteins escape their original compartments, and a retrieval pathway is used to return the escaped proteins to their original compartment.
The ER uses many checkpoints to prevent the entry of incorrectly folded or a resident protein as cargo onto a transport vesicle. These mechanisms...
The ER uses many checkpoints to prevent the entry of incorrectly folded or a resident protein as cargo onto a transport vesicle. These mechanisms...

