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Updated: Feb 9, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Van-Gogh-like 2 antagonises the canonical WNT pathway and is methylated in colorectal cancers
G Piazzi1, M Selgrad, M Garcia
1Department of Internal Medicine, Baylor Research Institute and Sammons Cancer Center, Baylor University Medical Center, 3500 Gaston Avenue, Dallas, TX 75246, USA.
Background:
Aberrant activation of the canonical WNT signaling is a feature of colorectal cancer (CRC). Van-Gogh-like 2 (VANGL2) belongs to the non-canonical WNT pathway whose activation inhibits canonical WNT signaling. In this study, we investigated the role of VANGL2 and its epigenetic regulation in CRC.
Methods:
Van-Gogh-like 2 expression and promoter methylation after 5-aza-2'-deoxycytidine (5-aza) treatment were evaluated in CRC cells. DNA samples from 418 sporadic CRCs were tested for VANGL2 promoter methylation and microsatellite instability (MSI). Proliferation, colony formation and activation of the WNT pathway were tested in cells after VANGL2 overexpression.
Results:
Van-Gogh-like 2 mRNA was significantly higher in 5-aza-treated RKO, LOVO and SW48, whereas no differences were found in SW480. Van-Gogh-like 2 was fully methylated in RKO, SW48, HCT116, DLD1 and Caco2; partially methylated in LOVO, LS174T and SW837; and unmethylated in SW480, SW620 and HT29. Higher expression of VANGL2 mRNA was found in the unmethylated cell lines. In CRC specimens (8.93% MSI), methylated VANGL2 was associated with MSI, higher grade, proximal colon location and BRAF mutation. Van-Gogh-like 2 overexpression in SW480 significantly decreased proliferation, colony formation and β-catenin levels.
Conclusion:
Van-Gogh-like 2 is frequently methylated in MSI-CRCs with BRAF mutation and may act as a tumour suppressor gene, counteracting WNT/β-catenin signaling.
Insights
Van-Gogh-like 2 (VANGL2) is often methylated in colorectal cancer (CRC) with specific mutations. VANGL2 may suppress tumors by inhibiting WNT/β-catenin signaling, offering a potential therapeutic target for CRC.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Aberrant WNT signaling is a hallmark of colorectal cancer (CRC).
- Van-Gogh-like 2 (VANGL2), part of the non-canonical WNT pathway, inhibits canonical WNT signaling.
- Investigating VANGL2's role and epigenetic regulation in CRC is crucial.
Purpose of the Study:
- To investigate the role of Van-Gogh-like 2 (VANGL2) in colorectal cancer (CRC).
- To explore the epigenetic regulation of VANGL2 in CRC.
- To determine VANGL2's potential as a tumor suppressor gene.
Main Methods:
- Assessed VANGL2 expression and promoter methylation in CRC cells after 5-aza-2'-deoxycytidine treatment.
- Analyzed VANGL2 promoter methylation and microsatellite instability (MSI) in 418 sporadic CRC specimens.
- Evaluated proliferation, colony formation, and WNT pathway activation following VANGL2 overexpression.
Main Results:
- VANGL2 mRNA increased in 5-aza-treated CRC cells; methylation varied across cell lines, correlating with expression levels.
- In CRC specimens, methylated VANGL2 was linked to MSI, higher grade, proximal location, and BRAF mutation.
- Overexpression of VANGL2 in SW480 cells reduced proliferation, colony formation, and β-catenin levels.
Conclusions:
- VANGL2 is frequently methylated in MSI-CRCs with BRAF mutations.
- VANGL2 functions as a tumor suppressor gene by counteracting WNT/β-catenin signaling.
- Epigenetic silencing of VANGL2 may contribute to CRC development.
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