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Updated: May 12, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
First deep intronic mutation in the NOTCH3 gene in a family with late-onset CADASIL
Silvia Bianchi1, Maria Teresa Dotti, Gian Nicola Gallus
1Department of Medical, Surgical and Neurological Sciences, University of Siena, Siena, Italy.
Insights
Cerebral Autosomal-Dominant Arteriopathy with Subcortical Infarcts and Leukoencephalopathy (CADASIL) diagnosis can be challenging. A novel NOTCH3 gene deletion causing aberrant splicing offers new diagnostic insights for genetically undefined cases.
Area of Science:
- Genetics
- Neurology
- Molecular Biology
Background:
- Cerebral Autosomal-Dominant Arteriopathy with Subcortical Infarcts and Leukoencephalopathy (CADASIL) is an inherited cerebrovascular disorder.
- It is characterized by migraine with aura, stroke, cognitive decline, and mood disturbances, typically with adult onset.
Observation:
- Most CADASIL cases result from missense mutations in the NOTCH3 gene, usually affecting cysteine residues.
- Previously reported splice site mutations are rare, and some patients lack identified genetic causes.
Findings:
- A novel intronic deletion (c.341-26_24delAAC) in the NOTCH3 gene was identified in a family with late-onset CADASIL.
- This deletion induced complete intron 3 retention, leading to an in-frame insertion of 25 amino acids, including a cysteine.
Implications:
- This is the first report of aberrant NOTCH3 splicing caused by a mutation distant from the canonical splice site.
- Splicing assays should be considered essential for diagnosing genetically undefined CADASIL cases.
Abstract:
CADASIL is the most prominent inherited form of vascular dementia. The main clinical features include migraine with aura, stroke, mood disturbances, and cognitive decline, with a mid-life (30s-60s) adult onset. Genetic testing is the gold standard for the diagnosis. CADASIL is caused mostly by missense mutations in the NOTCH3 gene, invariably involving a cysteine residue. Only a couple of splice site mutations have been reported. In a few pathologically defined patients, genetic mutations remain unidentified. We report a family with late-onset CADASIL phenotype carrying a novel intronic deletion in the NOTCH3 gene (c.341-26_24delAAC). Transcript analysis revealed a splicing alteration, with the complete intron 3 retention. The insertion was in-frame and encoded an extra 25 amino acids, including 1 cysteine. This is the first report of an aberrant splicing event of the NOTCH3 gene associated with a mutation far away from the canonical splice site. Our finding suggests that the assays used to evaluate splicing should be mandatory in the diagnostic setting of genetically undefined CADASIL cases.
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