Data-driven modeling of SRC control on the mitochondrial pathway of apoptosis: implication for anticancer therapy
Annabelle Ballesta1, Jonathan Lopez, Nikolay Popgeorgiev
1BANG project team, INRIA Rocquencourt, Le Chesnay, Yvelines, France. annabelle.ballesta@inria.fr
Abstract:
Src tyrosine kinases are deregulated in numerous cancers and may favor tumorigenesis and tumor progression. We previously described that Src activation in NIH-3T3 mouse fibroblasts promoted cell resistance to apoptosis. Indeed, Src was found to accelerate the degradation of the pro-apoptotic BH3-only protein Bik and compromised Bax activation as well as subsequent mitochondrial outer membrane permeabilization. The present study undertook a systems biomedicine approach to design optimal anticancer therapeutic strategies using Src-transformed and parental fibroblasts as a biological model. First, a mathematical model of Bik kinetics was designed and fitted to biological data. It guided further experimental investigation that showed that Bik total amount remained constant during staurosporine exposure, and suggested that Bik protein might undergo activation to induce apoptosis. Then, a mathematical model of the mitochondrial pathway of apoptosis was designed and fitted to experimental results. It showed that Src inhibitors could circumvent resistance to apoptosis in Src-transformed cells but gave no specific advantage to parental cells. In addition, it predicted that inhibitors of Bcl-2 antiapoptotic proteins such as ABT-737 should not be used in this biological system in which apoptosis resistance relied on the deficiency of an apoptosis accelerator but not on the overexpression of an apoptosis inhibitor, which was experimentally verified. Finally, we designed theoretically optimal therapeutic strategies using the data-calibrated model. All of them relied on the observed Bax overexpression in Src-transformed cells compared to parental fibroblasts. Indeed, they all involved Bax downregulation such that Bax levels would still be high enough to induce apoptosis in Src-transformed cells but not in parental ones. Efficacy of this counterintuitive therapeutic strategy was further experimentally validated. Thus, the use of Bax inhibitors might be an unexpected way to specifically target cancer cells with deregulated Src tyrosine kinase activity.
Insights
Targeting cancer cells with deregulated Src tyrosine kinase activity may involve downregulating Bax. This strategy leverages Bax overexpression in cancer cells to induce apoptosis, offering a novel therapeutic approach.
Area of Science:
- Oncology
- Biochemistry
- Systems Biology
Background:
- Src tyrosine kinases are frequently deregulated in cancers, promoting tumorigenesis and tumor progression.
- Src activation confers resistance to apoptosis by accelerating Bik degradation and impairing Bax activation.
- Cancer cells often exhibit resistance to apoptosis, necessitating novel therapeutic strategies.
Purpose of the Study:
- To design optimal anticancer therapeutic strategies using a systems biomedicine approach.
- To investigate the role of Src in apoptosis resistance and identify potential therapeutic targets.
- To develop and validate novel therapeutic strategies for Src-driven cancers.
Main Methods:
- Development and fitting of mathematical models for Bik kinetics and the mitochondrial apoptosis pathway.
- Experimental validation of model predictions using Src-transformed and parental fibroblasts.
- Comparative analysis of apoptosis regulation in Src-transformed versus parental cells.
Main Results:
- Src inhibitors can overcome apoptosis resistance in Src-transformed cells.
- Inhibitors of antiapoptotic Bcl-2 proteins are ineffective when resistance stems from a lack of apoptosis accelerators.
- Bax overexpression in Src-transformed cells was identified as a key factor for therapeutic targeting.
Conclusions:
- Targeting Bax, rather than antiapoptotic proteins, is a promising strategy for Src-driven cancers.
- Downregulating Bax to specific levels can selectively induce apoptosis in cancer cells with deregulated Src.
- This study presents an unexpected yet validated therapeutic approach using Bax inhibitors for Src-targeted cancer therapy.
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