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Updated: May 12, 2026

An In Vitro Batch-culture Model to Estimate the Effects of Interventional Regimens on Human Fecal Microbiota
Published on: July 31, 2019
Prebiotics, faecal transplants and microbial network units to stimulate biodiversity of the human gut microbiome
Pieter Van den Abbeele1, Willy Verstraete, Sahar El Aidy
1Laboratory of Microbial Ecology and Technology (LabMET), Ghent University, Coupure Links 653, 9000, Ghent, Belgium.
Insights
Restoring gut microbiome diversity is crucial for health. Strategies like redefined prebiotics, fecal transplantation, and introducing microbial networks can combat diseases linked to reduced microbial diversity.
Area of Science:
- Microbiome research
- Human-microbe interactions
- Gut health
Background:
- The human gut microbiome is essential for immune development, but modern practices like C-sections, formula feeding, antibiotic overuse, and Western diets reduce microbial diversity.
- Reduced gut microbial diversity is linked to various health issues, including Clostridium difficile infection, inflammatory bowel diseases, and obesity.
- A healthy gut microbiome is defined by a diverse, metabolically interactive community of microbes.
Purpose of the Study:
- To review existing and novel strategies for managing and restoring gut microbiome diversity.
- To highlight the importance of enhancing ecological biodiversity over single-species stimulation.
- To discuss the potential of fecal transplantation and microbial network units in restoring gut health.
Main Methods:
- Review of current scientific literature on gut microbiome management.
- Analysis of prebiotic compounds' role in enhancing microbial biodiversity.
- Evaluation of fecal microbiota transplantation (FMT) and introduction of pre-organized microbial associations.
Main Results:
- Prebiotics should be redefined to promote overall ecological biodiversity, not just specific species.
- Fecal transplantation shows promise in treating Clostridium difficile infections and obesity-related metabolic disorders.
- Introducing key microbial network units can strengthen the gut microbiome's overall structure and function.
Conclusions:
- Managing gut microbiome diversity is critical for preventing and treating numerous diseases.
- Novel approaches like biodiversity-focused prebiotics and microbial network interventions offer promising therapeutic avenues.
- Restoring a healthy, diverse gut microbiome is essential for supporting human health.
Abstract:
Accumulating evidence demonstrates the intimate association between human hosts and the gut microbiome. Starting at birth, the sterile gut of the newborn acquires a diverse spectrum of microbes, needed for immunological priming. However, current practices (caesarean sections, use of formula milk) deprive newborns from being exposed to this broad spectrum of microbes. Unnecessary use of antibiotics and excessive hygienic precautions (e.g. natural versus chlorinated drinking water) together with the Western diet further contribute to a decreased microbial diversity in the adult gut. This has been correlated with recurrent Clostridium difficile infection, inflammatory bowel diseases and obesity, among others. A healthy gut microbiome is thus characterized by a diverse network of metabolically interacting microbial members. In this context, we review several existing and novel approaches to manage the gut microbiome. First, prebiotic compounds should be re-defined in the sense that they should enhance the ecological biodiversity rather than stimulating single species. Recent studies highlight that structurally different polysaccharides require specific primary degraders but also enhance a similar network of secondary degraders that benefit from cross-feeding. A faecal transplantation is a second approach to restore biodiversity when the microbiota is severely dysbiosed, with promising results regarding C. difficile-associated disease and obesity-related metabolic syndromes. A final strategy is the introduction of key microbial network units, i.e. pre-organized microbial associations, which strengthen the overall microbial network of the gut microbiome that supports human health.
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