The mRNA encoding TAFI is alternatively spliced in different cell types and produces intracellular forms of the

Joellen H H Lin1, Dragana Novakovic, Christina M Rizzo

  • 1Department of Chemistry Biochemistry, Room 275-3 Essex Hall, University of Windsor, Windsor, Ontario N9B 3P4, Canada.

Insights

Alternative splicing of thrombin-activatable fibrinolysis inhibitor (TAFI) mRNA produces intracellular variants. These TAFI variants lack secreted carboxypeptidase activity but may have novel intracellular functions.

Area of Science:

  • Molecular Biology
  • Biochemistry
  • Genetics

Background:

  • Thrombin-activatable fibrinolysis inhibitor (TAFI) is a key regulator linking coagulation and fibrinolysis.
  • TAFI is primarily synthesized in the liver and expressed in platelets and macrophages.
  • Previous studies identified alternatively spliced CPB2 mRNA variants (∆7 and ∆7+11) in specific cell types.

Purpose of the Study:

  • To investigate alternative splicing of CPB2 mRNA across diverse human cell types.
  • To characterize the functional properties of TAFI variants encoded by these transcripts.

Main Methods:

  • Reverse transcription polymerase chain reaction (RT-PCR) was used to detect CPB2 mRNA splicing variants.
  • Recombinant expression in mammalian cells was employed to assess the functional properties of TAFI variants.
  • Analysis included wild-type CPB2, ∆7, ∆7+11, and ∆11 cDNA constructs.

Main Results:

  • The ∆7 exon skipping event was identified in liver, megakaryoblasts, macrophages, PBMCs, platelets, testis, cerebellum, and neuroblastoma cells.
  • A novel ∆7+8 exon skipping event was detected in liver and megakaryocytes.
  • Alternatively spliced TAFI variants are intracellular, not activated by thrombin-thrombomodulin, and lack secreted carboxypeptidase activity.

Conclusions:

  • Alternative splicing of CPB2 mRNA generates intracellular TAFI variants with distinct functional properties.
  • These intracellular TAFI forms may possess novel roles in intracellular proteolysis.
  • Full-length TAFI expression was also detected in brain tissues.

Related Concept Videos

RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
Transfer RNA Synthesis02:36

Transfer RNA Synthesis

One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
tRNA Activation02:26

tRNA Activation

Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...