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Updated: May 12, 2026

Detection and Visualization of DNA Damage-induced Protein Complexes in Suspension Cell Cultures Using the Proximity Ligation Assay
Published on: June 9, 2017
Comparative phosphoproteomic analysis of checkpoint recovery identifies new regulators of the DNA damage response
Vincentius A Halim1, Mónica Alvarez-Fernández, Yan Juan Xu
1Department of Medical Oncology and Cancer Genomics Center, University Medical Center Utrecht, 3584 CG Utrecht, Netherlands.
Abstract:
How cells recover from a DNA damage-induced arrest is currently poorly understood. We performed large-scale quantitative phosphoproteomics to identify changes in protein phosphorylation that occurred during recovery from arrest in the G2 phase of the cell cycle caused by DNA damage. We identified 154 proteins that were differentially phosphorylated, and systematic depletion of each of these differentially phosphorylated proteins by small interfering RNA (siRNA) identified at least 10 potential regulators of recovery. Astrin, a protein associated with the mitotic spindle, was among the potential regulators of recovery. We found that astrin controlled the abundance of the cell cycle regulator p53 during DNA damage-induced arrest. Cells in which astrin was depleted had decreased murine double minute 2 (MDM2) abundance and increased p53 at the later stages of the DNA damage response. Astrin was required for continued expression of genes encoding proteins that promote cell cycle progression in arrested cells. Thus, by controlling p53 abundance in cells recovering from DNA damage, astrin maintains the cells in a state competent to resume the cell cycle.
Insights
Researchers identified how cells recover from DNA damage-induced cell cycle arrest. Astrin protein controls p53 levels, enabling cells to resume cell cycle progression after DNA damage.
Area of Science:
- Cell biology
- Molecular biology
- Genetics
Background:
- Cell cycle arrest is a crucial response to DNA damage.
- Mechanisms governing cell cycle recovery remain poorly understood.
Purpose of the Study:
- To identify key proteins and pathways involved in cell cycle recovery after DNA damage.
- To elucidate the role of specific proteins in regulating cell cycle progression during DNA damage response.
Main Methods:
- Large-scale quantitative phosphoproteomics to identify differentially phosphorylated proteins.
- Systematic depletion of identified proteins using small interfering RNA (siRNA) to assess their function.
- Analysis of protein abundance (p53, MDM2) and gene expression during recovery.
Main Results:
- Identified 154 differentially phosphorylated proteins during recovery from G2 arrest.
- Astrin, a mitotic spindle-associated protein, was identified as a potential regulator of recovery.
- Astrin depletion led to decreased MDM2 and increased p53 levels, impacting DNA damage response.
- Astrin is required for maintaining gene expression that promotes cell cycle progression.
Conclusions:
- Astrin plays a critical role in cell cycle recovery by controlling p53 abundance.
- Astrin ensures cells remain competent to resume the cell cycle after DNA damage.
- This study reveals a novel mechanism for regulating cell cycle progression following DNA damage.
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