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Updated: May 11, 2026

Identification of MyoD Interactome Using Tandem Affinity Purification Coupled to Mass Spectrometry
Published on: May 17, 2016
Homeodomain-interacting protein kinase 2-dependent repression of myogenic differentiation is relieved by its
Laureano de la Vega1, Juliane Hornung, Elisabeth Kremmer
1Institute of Biochemistry, Medical Faculty, Friedrichstrasse 24, Justus-Liebig-University, 35392 Giessen, Germany.
Abstract:
Differentiation of skeletal muscle cells is accompanied by drastic changes in gene expression programs that depend on activation and repression of genes at defined time points. Here we identify the serine/threonine kinase homeodomain-interacting protein kinase 2 (HIPK2) as a corepressor that inhibits myocyte enhancer factor 2 (MEF2)-dependent gene expression in undifferentiated myoblasts. Downregulation of HIPK2 expression by shRNAs results in elevated expression of muscle-specific genes, whereas overexpression of the kinase dampens transcription of these genes. HIPK2 is constitutively associated with a multi-protein complex containing histone deacetylase (HDAC)3 and HDAC4 that serves to silence MEF2C-dependent transcription in undifferentiated myoblasts. HIPK2 interferes with gene expression on phosphorylation and HDAC3-dependent deacetylation of MEF2C. Ongoing muscle differentiation is accompanied by elevated caspase activity, which results in caspase-mediated cleavage of HIPK2 following aspartic acids 916 and 977 and the generation of a C-terminally truncated HIPK2 protein. The short form of the kinase loses its affinity to the repressive multi-protein complex and its ability to bind HDAC3 and HDAC4, thus alleviating its repressive function for expression of muscle genes. This study identifies HIPK2 as a further protein that determines the threshold and kinetics of gene expression in proliferating myoblasts and during the initial steps of myogenesis.
Insights
Homeodomain-interacting protein kinase 2 (HIPK2) acts as a repressor of muscle gene expression in myoblasts. During differentiation, HIPK2 is cleaved, releasing repression and enabling muscle-specific gene activation.
Area of Science:
- Molecular Biology
- Cell Biology
- Developmental Biology
Background:
- Skeletal muscle differentiation involves complex gene expression changes.
- Myocyte enhancer factor 2 (MEF2) transcription factors are crucial for myogenesis.
Purpose of the Study:
- To identify novel regulators of MEF2-dependent gene expression during myogenesis.
- To elucidate the role of HIPK2 in skeletal muscle cell differentiation.
Main Methods:
- Short hairpin RNA (shRNA) mediated knockdown of HIPK2.
- Overexpression of HIPK2 kinase.
- Analysis of protein-protein interactions using co-immunoprecipitation.
- Assessment of gene expression via quantitative PCR or similar techniques.
- Identification of cleavage sites through protein analysis.
Main Results:
- HIPK2 functions as a corepressor, inhibiting MEF2-dependent transcription in undifferentiated myoblasts.
- HIPK2 associates with HDAC3 and HDAC4 to silence muscle-specific genes.
- Caspase-mediated cleavage of HIPK2 during differentiation releases its repressive function.
- Truncated HIPK2 loses binding affinity for HDAC3/4, promoting muscle gene expression.
Conclusions:
- HIPK2 is a key regulator controlling the timing and extent of muscle gene expression during myogenesis.
- HIPK2 cleavage by caspases is a critical step in initiating myogenesis.
- HIPK2's regulatory mechanism provides insights into the precise control of muscle cell differentiation.
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