Related Experiment Video
Updated: May 11, 2026

Efficient and Scalable Production of Full-length Human Huntingtin Variants in Mammalian Cells using a Transient Expression System
Published on: December 10, 2021
Characterization of the Huntington intermediate CAG repeat expansion phenotype in PHAROS
Annie Killoran1, Kevin M Biglan, Joseph Jankovic
1University of Rochester, Rochester, NY, USA. Killoran:ankilloran@hsc.wvu.edu
Insights
Individuals with an intermediate-length huntingtin allele (IA) show behavioral issues like apathy and suicidal ideation, but normal motor and cognitive function. This may signal an early stage of Huntington disease (HD).
Area of Science:
- Neurogenetics
- Neurology
- Clinical Phenotyping
Background:
- Huntington disease (HD) is a neurodegenerative disorder caused by CAG repeat expansion in the Huntingtin gene.
- Intermediate-length alleles (IA) in the Huntingtin gene are typically considered non-pathogenic but may influence clinical presentation.
Purpose of the Study:
- To characterize the clinical phenotype associated with intermediate-length Huntingtin gene CAG repeat expansions.
- To investigate behavioral, motor, and cognitive differences in individuals with IA compared to controls and expanded alleles.
Main Methods:
- Utilized data from the Prospective Huntington At Risk Observational Study (PHAROS).
- Assessed 983 participants using the Unified Huntington's Disease Rating Scale (UHDRS) by blinded investigators.
- Compared UHDRS scores across three groups: nonexpanded (<26 CAG repeats), intermediate (27-35 CAG repeats), and expanded (>36 CAG repeats).
Main Results:
- Fifty participants (5.1%) possessed an intermediate allele (IA).
- The IA group exhibited similar motor, cognitive, and functional scores to controls but significantly worse behavioral scores, including apathy and suicidal ideation.
- IA participants showed worse behavioral scores than controls and expanded groups, with expanded groups also scoring worse than controls on specific behavioral measures.
- Four-year retention rates were lower for the IA group (48%) compared to expanded (58%) and control (60%) groups.
Conclusions:
- Intermediate-length Huntingtin alleles are associated with significant behavioral abnormalities, including apathy and suicidal ideation, despite normal motor and cognitive function.
- This behavioral phenotype may represent a prodromal stage of Huntington disease or a distinct phenotype.
- Further research is needed to understand the long-term implications and underlying pathology of intermediate-length alleles.
Objectives:
We aimed to describe the clinical phenotype conferred by the intermediate-length huntingtin allele CAG repeat expansion in a population-based study.
Methods:
The Prospective Huntington At Risk Observational Study (PHAROS) enrolled adults at risk for Huntington disease (HD). They were assessed approximately every 9 months with the Unified Huntington's Disease Rating Scale (UHDRS) by investigators unaware of participants' gene status. UHDRS scores were compared according to the Huntingtin gene CAG repeat number: expanded >36, intermediate 27-35, and nonexpanded controls <26.
Results:
Fifty (5.1%) of the 983 participants had an intermediate allele (IA). They were similar to controls on UHDRS motor, cognitive, and functional measures, but significantly worse behaviorally on apathy and suicidal ideation. On 5 of the 9 other behavioral items and on total behavior, the IA group's scores were worse than those of controls and expanded participants, who themselves scored significantly worse than controls on 6 behavioral measures. Retention rates at 4 years were 48% for the IA group compared to 58% and 60% for the expanded and control groups.
Conclusions:
In a cohort at risk for HD, the IA was associated with significant behavioral abnormalities but normal motor and cognition. This behavioral phenotype may represent a prodromal stage of HD, with the potential for subsequent clinical manifestations, or be part of a distinct phenotype conferred by pathology independent of the CAG expansion length.
Related Concept Videos
Huntington Disease l: Introduction
Pleiotropy
Pharmacogenomics: Identification of New Drug Targets

