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Updated: May 11, 2026

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DNA-Tethered RNA Polymerase for Programmable In vitro Transcription and Molecular Computation
Published on: December 29, 2021
Deploying RNA and DNA with Functionalized Carbon Nanotubes.
Simone Alidori1, Karim Asqiriba, Pablo Londero
1Departments of Medicine, Radiology, and the Molecular Pharmacology and Chemistry Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065.
Summary
Ammonium-functionalized carbon nanotubes (f-CNTs) efficiently bind DNA and RNA, forming stable complexes for potential in vivo gene delivery. Researchers discovered a mechanism for controlled release of the nucleic acid cargo from the nanotube platform.
Area of Science:
- Biomaterials Science
- Nanotechnology
- Molecular Biology
Background:
- Carbon nanotubes (CNTs) are explored as carriers for nucleic acid delivery.
- Functionalized CNTs (f-CNTs) are crucial for stable nucleic acid complexation.
- Understanding f-CNT-nucleic acid interactions is vital for in vivo applications.
Purpose of the Study:
- To investigate the binding capacity of f-CNTs for single- and double-strand oligonucleotides.
- To determine the thermodynamics, kinetics, and stoichiometry of f-CNT-nucleic acid assembly.
- To elucidate the mechanism of nucleic acid binding and release from f-CNTs.
Main Methods:
- Characterization of f-CNT-oligonucleotide complexes in aqueous solution.
- Thermodynamic and kinetic analysis of assembly.
- Spectroscopic techniques (31P-NMR, fluorescence emission) to study binding and release.
Main Results:
- f-CNTs exhibit high binding affinity (nanomolar range) for oligonucleotides.
- Complexation is rapid, with 1-5 sequences binding per nanotube.
- Electrostatic, hydrogen-bonding, and π-stacking interactions mediate assembly.
- Conditions for stable binding and cargo transport were identified.
- A mechanism for controlled nucleic acid release was discovered.
Conclusions:
- Soluble nucleic acid-f-CNT supramolecular assemblies are suitable for in vivo gene delivery.
- f-CNTs offer a promising platform for efficient and controllable nucleic acid transport.
- The discovered release mechanism enhances the potential of f-CNTs as gene delivery vehicles.

