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Updated: May 11, 2026

Co-culture of Living Microbiome with Microengineered Human Intestinal Villi in a Gut-on-a-Chip Microfluidic Device
Published on: August 30, 2016
Intestinal microbial diversity and perioperative complications
Matthew W Ralls1, Eiichi Miyasaka, Daniel H Teitelbaum
1Section of Pediatric Surgery, Department of Surgery, University of Michigan, Ann Arbor, Michigan.
Background And Aims:
Enteral nutrient deprivation via parenteral nutrition (PN) in a mouse model leads to a local mucosal inflammatory response. This proinflammatory response leads to a loss of epithelial barrier function and atrophy of the intestine. Although the underlying mechanisms are unknown, a potential contributing factor is the impact PN has on the intestinal microbiome. We recently identified a shift in the intestinal microbial community in mice given PN; however, it is unknown whether such changes occur in humans. We hypothesized that similar microbial changes occur in humans during periods of enteral nutrient deprivation.
Methods:
A series of small bowel specimens were obtained from pediatric and adult patients undergoing small intestinal resection. Mucosally associated bacteria were harvested and analyzed using 454 pyrosequencing techniques. Statistical analysis of microbial diversity and differences in microbial characteristics were assessed between enterally fed and enterally deprived portions of the intestine. Occurrence of postoperative infectious and anastomotic complications was also examined.
Results:
Pyrosequencing demonstrated a wide variability in microbial diversity within all groups. Principal coordinate analysis demonstrated only a partial stratification of microbial communities between fed and enterally deprived groups. Interestingly, a tight correlation was identified in patients who had a low level of enteric microbial diversity and those who developed postoperative enteric-derived infections or intestinal anastomotic disruption.
Conclusions:
Loss of enteral nutrients and systemic antibiotic therapy in humans is associated with a significant loss of microbial biodiversity within the small bowel mucosa. These changes were associated with a number of enteric-derived intestinal infections and intestinal anastomotic disruptions.
Insights
Parenteral nutrition (PN) in humans significantly reduces small bowel microbial diversity, increasing risks of enteric infections and anastomotic disruptions. This highlights the critical role of the gut microbiome in maintaining intestinal health during nutrient deprivation.
Area of Science:
- Gastroenterology
- Microbiology
- Surgical Research
Background:
- Enteral nutrient deprivation via parenteral nutrition (PN) induces inflammation, barrier dysfunction, and atrophy in mouse models.
- PN impacts the intestinal microbiome, but its effects on the human microbiome during nutrient deprivation are unknown.
Purpose of the Study:
- To investigate whether enteral nutrient deprivation in humans causes similar shifts in the intestinal microbiome as observed in mice.
- To explore the association between changes in the small bowel microbiome and postoperative complications.
Main Methods:
- Analysis of mucosally associated bacteria from small bowel specimens of pediatric and adult patients undergoing resection.
- Utilized 454 pyrosequencing to assess microbial diversity and characteristics in enterally fed versus deprived segments.
- Examined the occurrence of postoperative infectious and anastomotic complications.
Main Results:
- Pyrosequencing revealed significant microbial diversity variability across all patient groups.
- Microbial communities showed only partial stratification between enterally fed and deprived intestinal segments.
- A strong correlation was found between low enteric microbial diversity and the development of postoperative enteric infections or anastomotic disruption.
Conclusions:
- Loss of enteral nutrients and systemic antibiotics in humans leads to a significant reduction in small bowel mucosal microbial biodiversity.
- These microbial shifts are associated with increased risks of enteric infections and intestinal anastomotic disruptions.
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