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Published on: October 23, 2018
mTOR kinase structure, mechanism and regulation
Haijuan Yang1, Derek G Rudge, Joseph D Koos
1Structural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Abstract:
The mammalian target of rapamycin (mTOR), a phosphoinositide 3-kinase-related protein kinase, controls cell growth in response to nutrients and growth factors and is frequently deregulated in cancer. Here we report co-crystal structures of a complex of truncated mTOR and mammalian lethal with SEC13 protein 8 (mLST8) with an ATP transition state mimic and with ATP-site inhibitors. The structures reveal an intrinsically active kinase conformation, with catalytic residues and a catalytic mechanism remarkably similar to canonical protein kinases. The active site is highly recessed owing to the FKBP12-rapamycin-binding (FRB) domain and an inhibitory helix protruding from the catalytic cleft. mTOR-activating mutations map to the structural framework that holds these elements in place, indicating that the kinase is controlled by restricted access. In vitro biochemistry shows that the FRB domain acts as a gatekeeper, with its rapamycin-binding site interacting with substrates to grant them access to the restricted active site. Rapamycin-FKBP12 inhibits the kinase by directly blocking substrate recruitment and by further restricting active-site access. The structures also reveal active-site residues and conformational changes that underlie inhibitor potency and specificity.
Insights
The mammalian target of rapamycin (mTOR) kinase structure reveals an intrinsically active conformation. Its activity is regulated by restricted active site access, controlled by the FRB domain and an inhibitory helix.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- The mammalian target of rapamycin (mTOR) is a key regulator of cell growth, frequently dysregulated in cancer.
- Understanding mTOR's structure and regulation is crucial for developing targeted cancer therapies.
Purpose of the Study:
- To elucidate the co-crystal structures of a truncated mTOR-mLST8 complex.
- To investigate the structural basis of mTOR activation and inhibition.
Main Methods:
- Co-crystal structure determination of mTOR-mLST8 complex with ATP transition state mimic and inhibitors.
- In vitro biochemical assays to study substrate access and inhibition mechanisms.
Main Results:
- The mTOR kinase exhibits an intrinsically active conformation with a recessed active site.
- The FKBP12-rapamycin-binding (FRB) domain acts as a gatekeeper, regulating substrate access.
- Rapamycin-FKBP12 inhibits mTOR by blocking substrate recruitment and restricting active-site access.
- mTOR-activating mutations affect the structural framework controlling active site access.
Conclusions:
- mTOR's kinase activity is tightly regulated by restricted access to its active site.
- The FRB domain plays a critical role in substrate recognition and mTOR regulation.
- Structural insights provide a basis for understanding mTOR inhibitor potency and specificity.
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