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Labeling DNA Probes03:31

Labeling DNA Probes

DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...

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Genetically-encoded Molecular Probes to Study G Protein-coupled Receptors
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Published on: September 13, 2013

Optimized chemical probes for REV-ERBα.

Ryan P Trump1, Stefano Bresciani, Anthony W J Cooper

  • 1Molecular Discovery Research, GlaxoSmithKline, Research Triangle Park, North Carolina 27709-3398, USA. ryan.p.trump@gsk.com

Journal of Medicinal Chemistry
|May 10, 2013
PubMed
Summary

Researchers optimized REV-ERBα agonists for circadian rhythm regulation. Potent compounds suppressed BMAL and IL-6 expression, with one showing in vivo bioavailability.

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Area of Science:

  • Pharmacology and Molecular Biology
  • Chronobiology and Metabolic Regulation

Background:

  • REV-ERBα (NR1D1) is a key nuclear receptor regulating circadian rhythms and metabolic processes.
  • Targeting REV-ERBα offers therapeutic potential for circadian rhythm disorders and associated pathologies.

Purpose of the Study:

  • To optimize a series of REV-ERBα agonists derived from the GSK4112 scaffold.
  • To enhance agonist potency, selectivity against LXRα, and in vivo pharmacokinetic properties.

Main Methods:

  • Medicinal chemistry optimization of GSK4112-based REV-ERBα agonists.
  • In vitro assessment of BMAL and IL-6 gene expression suppression in human cells.
  • Evaluation of selectivity over liver X receptor alpha (LXRα).
  • In vivo pharmacokinetic studies including intravenous (iv) and oral dosing.

Main Results:

  • Identified potent REV-ERBα agonists (compounds 4, 10, 16, 23) that effectively suppress BMAL and IL-6 expression.
  • Achieved excellent selectivity for REV-ERBα over LXRα for the optimized compounds.
  • Compound 4 demonstrated favorable in vivo bioavailability following both iv and oral administration.

Conclusions:

  • The optimized REV-ERBα agonists represent promising drug candidates for modulating circadian rhythm and related physiological functions.
  • Compound 4's demonstrated in vivo bioavailability supports its further development for therapeutic applications targeting REV-ERBα.