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Updated: May 11, 2026

Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 15, 2013
Structure-based discovery of antagonists of nuclear receptor LRH-1
Cindy Benod1, Jens Carlsson, Rubatharshini Uthayaruban
1Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, California 94158, USA.
Abstract:
Liver receptor homolog 1 (nuclear receptor LRH-1, NR5A2) is an essential regulator of gene transcription, critical for maintenance of cell pluripotency in early development and imperative for the proper functions of the liver, pancreas, and intestines during the adult life. Although physiological hormones of LRH-1 have not yet been identified, crystallographic and biochemical studies demonstrated that LRH-1 could bind regulatory ligands and suggested phosphatidylinositols as potential hormone candidates for this receptor. No synthetic antagonists of LRH-1 are known to date. Here, we identify the first small molecule antagonists of LRH-1 activity. Our search for LRH-1 modulators was empowered by screening of 5.2 million commercially available compounds via molecular docking followed by verification of the top-ranked molecules using in vitro direct binding and transcriptional assays. Experimental evaluation of the predicted ligands identified two compounds that inhibit the transcriptional activity of LRH-1 and diminish the expression of the receptor's target genes. Among the affected transcriptional targets are co-repressor SHP (small heterodimer partner) as well as cyclin E1 (CCNE1) and G0S2 genes that are known to regulate cell growth and proliferation. Treatments of human pancreatic (AsPC-1), colon (HT29), and breast adenocarcinoma cells T47D and MDA-MB-468 with the LRH-1 antagonists resulted in the receptor-mediated inhibition of cancer cell proliferation. Our data suggest that specific antagonists of LRH-1 could be used as specific molecular probes for elucidating the roles of the receptor in different types of malignancies.
Insights
Researchers discovered the first small molecule antagonists for Liver Receptor Homolog 1 (LRH-1), a key gene regulator. These compounds inhibit LRH-1 activity, impacting cancer cell proliferation and offering potential molecular probes for malignancy research.
Area of Science:
- Molecular biology
- Endocrinology
- Cancer research
Background:
- Liver receptor homolog 1 (LRH-1) is a crucial nuclear receptor regulating gene transcription.
- LRH-1 plays vital roles in early development, liver, pancreas, and intestinal functions.
- No synthetic LRH-1 antagonists were previously known, limiting research into its functions and therapeutic potential.
Purpose of the Study:
- To identify the first small molecule antagonists of LRH-1.
- To investigate the effects of these antagonists on LRH-1 transcriptional activity and target gene expression.
- To evaluate the potential of LRH-1 antagonists in inhibiting cancer cell proliferation.
Main Methods:
- Screening of 5.2 million compounds using molecular docking.
- In vitro direct binding and transcriptional assays for verification.
- Treatment of human cancer cell lines (pancreatic, colon, breast) with identified antagonists.
Main Results:
- Identified the first small molecule antagonists of LRH-1.
- Demonstrated inhibition of LRH-1 transcriptional activity and target genes (SHP, CCNE1, G0S2).
- Showed LRH-1 antagonist-mediated inhibition of cancer cell proliferation in multiple cell lines.
Conclusions:
- The identified small molecules are the first synthetic antagonists of LRH-1.
- LRH-1 antagonists effectively inhibit cancer cell growth by targeting key genes.
- These antagonists represent valuable molecular probes for studying LRH-1 in malignancies.
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