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Updated: May 11, 2026

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
Structural modeling and simulation studies of human cyclooxygenase (COX) isozymes with selected terpenes:
Swati Singh1, Veda P Pandey, Huma Naaz
1Bioinformatics Infrastructure Facility, Center of Excellence in Bioinformatics, Department of Biochemistry, University of Lucknow, Lucknow 226007, India.
Abstract:
In view of recently implicated role of COX-1 in human health and diseases, including cancer, development of safe and selective drugs, as COX-1 inhibitor is desirable. Human COX-1 and COX-2 isozymes have been modeled using in silico tools and relative efficacies of terpenoids as their inhibitors have been investigated by docking. The docking analyses of 10 selected terpenoids along with drugs revealed that all of the terpenoids were more potent inhibitors of COX-1 rather than COX-2 with the oleanolic acid as the most potent inhibitor of COX in general (binding energy [-18.68Kcal/mol and -18.25Kcal/mol] and estimated Ki [5.57×10(-8)µM and 11.4×10(-8)µM] for COX-1 and COX-2, respectively) and β-carotene as most selective inhibitor of COX-1. Furthermore, ibuprofen and aspirin were found to be preferential inhibitor of COX-1 and COX-2, respectively.
Insights
Terpenoids show potential as selective inhibitors of cyclooxygenase-1 (COX-1), a target for cancer therapy. Oleanolic acid and beta-carotene exhibit strong COX-1 inhibitory activity, suggesting new therapeutic avenues.
Area of Science:
- Biochemistry
- Pharmacology
- Computational Chemistry
Background:
- Cyclooxygenase-1 (COX-1) plays a role in human health and diseases, including cancer.
- Developing safe and selective COX-1 inhibitors is a therapeutic goal.
- Terpenoids are natural compounds with potential medicinal properties.
Purpose of the Study:
- To investigate the potential of terpenoids as selective inhibitors of human COX-1 and COX-2 isozymes.
- To identify specific terpenoids with potent COX-1 inhibitory activity.
- To compare the inhibitory efficacy of terpenoids with known drugs.
Main Methods:
- In silico modeling of human COX-1 and COX-2 isozymes.
- Molecular docking simulations to assess the binding affinities of terpenoids.
- Evaluation of binding energies and inhibition constants (Ki).
Main Results:
- All 10 tested terpenoids demonstrated greater potency as COX-1 inhibitors compared to COX-2 inhibitors.
- Oleanolic acid emerged as the most potent inhibitor of both COX-1 and COX-2.
- Beta-carotene was identified as the most selective COX-1 inhibitor among the tested terpenoids.
- Ibuprofen and aspirin showed preferential inhibition of COX-1 and COX-2, respectively.
Conclusions:
- Terpenoids, particularly oleanolic acid and beta-carotene, represent promising candidates for developing selective COX-1 inhibitors.
- These findings support the exploration of terpenoids as novel therapeutic agents for COX-1-related diseases, including cancer.
- In silico methods provide a valuable approach for screening natural compounds as drug candidates.
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