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Updated: May 11, 2026

Utilizing Functional Genomics Screening to Identify Potentially Novel Drug Targets in Cancer Cell Spheroid Cultures
Published on: December 26, 2016
Functional genomics lead to new therapies in follicular lymphoma
Elisa Oricchio1, Hans-Guido Wendel
1Cancer Biology & Genetics Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA. oriccche@mskcc.org
Abstract:
Recent technological advances allow analysis of genomic changes in cancer in unprecedented detail. The next challenge is to prioritize the multitude of genetic aberrations found and identify therapeutic opportunities. We recently completed a study that illustrates the use of unbiased genetic screens and murine cancer models to find therapeutic targets among complex genomic data. We genetically dissected the common deletion of chromosome 6q and identified the ephrin receptor A7 (EPHA7) as a tumor suppressor in lymphoma. Notably, EPHA7 encodes a soluble splice variant that acts as an extrinsic tumor suppressor. Accordingly, we developed an antibody-based strategy to specifically deliver EPHA7 back to tumors that have lost this gene. Recent sequencing studies have implicated EPHA7 in lung cancer and other tumors, suggesting a broader therapeutic potential for antibody-mediated delivery of this tumor suppressor for cancer therapy. Together, our comprehensive approach provides new insights into cancer biology and may directly lead to the development of new cancer therapies.
Insights
Researchers identified ephrin receptor A7 (EPHA7) as a tumor suppressor in lymphoma by analyzing chromosome 6q deletions. An antibody strategy was developed to deliver EPHA7, showing potential for broader cancer therapy applications.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- Technological advances enable detailed cancer genomic analysis.
- Prioritizing genetic aberrations for therapeutic targeting remains a challenge.
Purpose of the Study:
- To identify therapeutic targets from complex genomic data using unbiased genetic screens.
- To investigate the role of chromosome 6q deletions in cancer.
Main Methods:
- Utilized unbiased genetic screens and murine cancer models.
- Genetically dissected chromosome 6q deletions.
- Developed an antibody-based delivery strategy for EPHA7.
Main Results:
- Identified ephrin receptor A7 (EPHA7) as a tumor suppressor in lymphoma.
- Discovered a soluble splice variant of EPHA7 acting as an extrinsic tumor suppressor.
- Demonstrated successful antibody-mediated delivery of EPHA7 to tumors.
Conclusions:
- EPHA7 functions as a tumor suppressor, particularly in lymphoma.
- Antibody-mediated delivery of EPHA7 offers a potential therapeutic strategy for cancers with EPHA7 loss.
- This approach has broader implications for treating lung cancer and other malignancies.
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