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Updated: May 11, 2026

Isolation and Quantification of Epstein-Barr Virus from the P3HR1 Cell Line
Published on: September 28, 2022
Epstein-Barr virus-encoded microRNA BART15-3p promotes cell apoptosis partially by targeting BRUCE
Hoyun Choi1, Hanna Lee, Sae Rom Kim
1Research Institute of Immunobiology, Department of Medical Lifescience, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea.
Abstract:
Epstein-Barr Virus (EBV) generates a variety of viral microRNAs (miRNAs) by processing the BHRF1 and BamHI A rightward (BART) transcripts. BART miRNAs are expressed in all cells latently infected with EBV, but the functions of most BART miRNAs remain unknown. The results of a cell proliferation assay revealed that miR-BART15-3p inhibited cell proliferation. Fluorescence-activated cell sorting following staining with annexin V or propidium iodide showed that miR-BART15-3p promoted apoptosis. Furthermore, the inhibitor for miR-BART15-3p increased cell growth and reduced apoptosis in EBV-infected cells. Using bioinformatic analyses, we predicted that miR-BART15-3p may target the antiapoptotic B-cell lymphoma 2 (BCL2), BCL2L2, DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), and baculovirus inhibitor of apoptosis repeat-containing ubiquitin-conjugating enzyme (BRUCE) mRNAs. The luciferase reporter assay showed that only the 3' untranslated region (UTR) of BRUCE was affected by miR-BART15-3p. Two putative seed-matched sites for miR-BART15-3p were evident on the BRUCE 3' UTR. The results of a mutation study indicated that miR-BART15-3p hybridized only with the first seed-matched site on the BRUCE 3' UTR. miR-BART15-3p downregulated the BRUCE protein in EBV-negative cells, while the inhibitor for miR-BART15-3p upregulated the BRUCE protein in EBV-infected cells without affecting the BRUCE mRNA level. miR-BART15-3p was secreted from EBV-infected gastric carcinoma cells, and the level of miR-BART15-3p was 2- to 16-fold higher in exosomes than in the corresponding cells. Our data suggest that miR-BART15-3p can induce apoptosis partially by inhibiting the translation of the apoptosis inhibitor BRUCE. Further study is warranted to understand the role of miR-BART15-3p in the EBV life cycle.
Insights
Epstein-Barr Virus microRNA miR-BART15-3p inhibits cell proliferation and promotes apoptosis by targeting the BRUCE protein. This viral microRNA is secreted in exosomes from infected cells.
Area of Science:
- Virology
- Molecular Biology
- Cancer Research
Background:
- Epstein-Barr Virus (EBV) encodes numerous microRNAs (miRNAs) from BART transcripts.
- The functions of most BART miRNAs, including miR-BART15-3p, are largely uncharacterized.
- EBV infection is associated with various cancers, including gastric carcinoma.
Purpose of the Study:
- To investigate the function of BART-derived microRNA miR-BART15-3p.
- To identify the molecular targets of miR-BART15-3p.
- To explore the role of miR-BART15-3p in EBV-infected cells and its potential involvement in cancer.
Main Methods:
- Cell proliferation assays and apoptosis assays (Annexin V, propidium iodide staining).
- Bioinformatic analysis to predict miRNA targets.
- Luciferase reporter assays and mutation studies to validate target interaction.
- Western blotting to assess protein levels and qRT-PCR for mRNA levels.
- Exosome isolation and characterization.
Main Results:
- miR-BART15-3p significantly inhibited cell proliferation and induced apoptosis in EBV-infected cells.
- Bioinformatic analysis predicted several anti-apoptotic targets; luciferase assays confirmed BRUCE as a direct target via its 3' UTR.
- miR-BART15-3p downregulated BRUCE protein levels post-transcriptionally, without affecting mRNA levels.
- miR-BART15-3p was secreted from gastric carcinoma cells, with higher concentrations found in exosomes.
Conclusions:
- miR-BART15-3p induces apoptosis, at least partially, by inhibiting the translation of the apoptosis inhibitor BRUCE.
- The findings reveal a novel mechanism by which EBV miRNAs can modulate host cell processes.
- miR-BART15-3p's secretion and targeting of BRUCE suggest its potential role in EBV pathogenesis and cancer development.
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