Related Experiment Video
Updated: May 11, 2026

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
Published on: December 9, 2015
Structural basis of resistance to anti-cytochrome bc₁ complex inhibitors: implication for drug improvement
Lothar Esser, Chang-An Yu, Di Xia1
1Laboratory of Cell Biology, NCI, NIH, 37 Convent Dr., Building 37, Room 2122C, Bethesda MD 20892. dixia@helix.nih.gov.
Abstract:
The emergence of drug resistance has devastating economic and social consequences, a testimonial of which is the rise and fall of inhibitors against the respiratory component cytochrome bc₁ complex, a time tested and highly effective target for disease control. Unfortunately, the mechanism of resistance is a multivariate problem, including primarily mutations in the gene of the cytochrome b subunit but also activation of alternative pathways of ubiquinol oxidation and pharmacokinetic effects. There is a considerable interest in designing new bc₁ inhibitors with novel modes of binding and lower propensity to induce the development of resistance. The accumulation of crystallographic data of bc₁ complexes with and without inhibitors bound provides the structural basis for rational drug design. In particular, the cytochrome b subunit offers two distinct active sites that can be targeted for inhibition - the quinol oxidation site and the quinone reduction site. This review brings together available structural information of inhibited bc₁ by various quinol oxidation- and reductionsite inhibitors, the inhibitor binding modes, conformational changes upon inhibitor binding of side chains in the active site and large scale domain movements of the iron-sulfur protein subunit. Structural data analysis provides a clear understanding of where and why existing inhibitors fail and points towards promising alternatives.
Insights
Drug resistance to cytochrome bc₁ complex inhibitors is a major challenge. Understanding resistance mechanisms and structural data aids in designing new, effective inhibitors with reduced resistance development.
Area of Science:
- Biochemistry
- Drug Discovery
- Structural Biology
Background:
- Drug resistance to cytochrome bc₁ complex inhibitors poses significant economic and social burdens.
- Mutations in the cytochrome b subunit, alternative ubiquinol oxidation pathways, and pharmacokinetics contribute to resistance.
- Developing novel bc₁ inhibitors with reduced resistance potential is a key research area.
Purpose of the Study:
- To review structural data of cytochrome bc₁ complexes with bound inhibitors.
- To analyze inhibitor binding modes and conformational changes.
- To identify reasons for inhibitor failure and propose alternative strategies.
Main Methods:
- Compilation and analysis of crystallographic data for cytochrome bc₁ complexes.
- Examination of inhibitor binding sites (quinol oxidation and quinone reduction sites).
- Assessment of conformational changes in active site side chains and domain movements.
Main Results:
- Detailed structural insights into inhibitor binding at distinct active sites.
- Understanding of how specific mutations and conformational changes lead to resistance.
- Identification of structural features contributing to the failure of existing inhibitors.
Conclusions:
- Structural analysis provides a basis for rational design of new bc₁ inhibitors.
- Targeting specific binding sites and understanding resistance mechanisms can guide the development of more effective drugs.
- Future drug design should consider novel binding modes to overcome existing resistance patterns.
Related Concept Videos
Treatment Resistant Cancers
The Electron Transport Chain
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q in...
Electron Transport Chain: Complex I and II
ROS generation is regulated and maintained at moderate levels necessary...
Drug toxicity: Idiosyncratic Reactions
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu
Factors Affecting Drug Biotransformation: Biological
Species differences: Variations in enzyme systems across species can cause disparities in drug metabolism. For instance, humans may metabolize certain drugs faster than rodents, altering therapeutic effects.
Strain differences: Genetic variations within a species can result in differing enzyme activity, impacting drug response and toxicity. For example, some mouse strains may...

