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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Novel associations of VKORC1 variants with higher acenocoumarol requirements
Ana Isabel Anton1, Juan J Cerezo-Manchado, Jose Padilla
1Centro Regional de Hemodonación and Morales Meseguer Hospital, University of Murcia, Murcia, Spain.
Insights
New VKORC1 gene variants were found to be associated with higher acenocoumarol doses in patients undergoing oral anticoagulant therapy. These findings may refine pharmacogenetic algorithms for personalized medicine.
Area of Science:
- Pharmacogenomics
- Molecular genetics
- Cardiovascular medicine
Background:
- Oral anticoagulant therapy (OAT) management benefits from algorithms integrating clinical and genetic data.
- VKORC1 and CYP2C9 gene polymorphisms are established determinants of coumarin dose, with no other significant pharmacogenetic variants previously identified.
Purpose of the Study:
- To discover novel genetic variations within the VKORC1 gene that influence oral anticoagulant therapy.
- To enhance the precision of pharmacogenetic models for acenocoumarol dosing.
Main Methods:
- Genotyping of VKORC1 rs9923231 and CYP2C9 polymorphisms in 3949 acenocoumarol users.
- Sequencing of the VKORC1 gene in 57 patients with unexpected dosing requirements.
- Multivariate linear regression analysis to assess the impact of identified variants on acenocoumarol dose.
Main Results:
- Novel VKORC1 variants, including rs17878544, rs55894764, and rs7200749, were identified in patients requiring higher-than-expected acenocoumarol doses.
- The D36Y and rs55894764 variants demonstrated a statistically significant, though minor, effect on acenocoumarol dose.
- The predictive model for acenocoumarol dosing improved slightly from 39% to 40% with the inclusion of these new variants.
Conclusions:
- The study successfully identified new VKORC1 variants associated with increased acenocoumarol dosage.
- The identified variants exhibit a low effect size, necessitating further research into their functional impact on VKORC1.
- Future studies should evaluate the clinical utility and cost-effectiveness of incorporating these variants into pharmacogenetic algorithms for OAT.
Background:
Algorithms combining both clinical and genetic data have been developed to improve oral anticoagulant therapy. Three polymorphisms in two genes, VKORC1 and CYP2C9, are the main coumarin dose determinants and no additional polymorphisms of any relevant pharmacogenetic importance have been identified.
Objectives:
To identify new genetic variations in VKORC1 with relevance for oral anticoagulant therapy.
Methods And Results:
3949 consecutive patients taking acenocoumarol were genotyped for the VKORC1 rs9923231 and CY2C9* polymorphisms. Of these, 145 patients with a dose outside the expected range for the genetic profile determined by these polymorphisms were selected. Clinical factors explained the phenotype in 88 patients. In the remaining 57 patients, all with higher doses than expected, we sequenced the VKORC1 gene and genetic changes were identified in 14 patients. Four patients carried VKORC1 variants previously related to high coumarin doses (L128R, N = 1 and D36Y, N = 3).Three polymorphisms were also detected: rs17878544 (N = 5), rs55894764 (N = 4) and rs7200749 (N = 2) which was in linkage disequilibrium with rs17878544. Finally, 2 patients had lost the rs9923231/rs9934438 linkage. The prevalence of these variations was higher in these patients than in the whole sample. Multivariate linear regression analysis revealed that only D36Y and rs55894764 variants significantly affect the dose, although the improvement in the prediction model is small (from 39% to 40%).
Conclusion:
Our strategy identified novel associations of VKORC1 variants with higher acenocoumarol doses albeit with a low effect size. Further studies are necessary to test their influence on the VKORC1 function and the cost/benefit of their inclusion in pharmacogenetic algorithms.
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