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Published on: October 5, 2020
Small molecule inhibition of the KRAS-PDEδ interaction impairs oncogenic KRAS signalling
Gunther Zimmermann1, Björn Papke, Shehab Ismail
1Department of Chemical Biology, Max Planck Institute of Molecular Physiology, D-44227 Dortmund, Germany.
Abstract:
The KRAS oncogene product is considered a major target in anticancer drug discovery. However, direct interference with KRAS signalling has not yet led to clinically useful drugs. Correct localization and signalling by farnesylated KRAS is regulated by the prenyl-binding protein PDEδ, which sustains the spatial organization of KRAS by facilitating its diffusion in the cytoplasm. Here we report that interfering with binding of mammalian PDEδ to KRAS by means of small molecules provides a novel opportunity to suppress oncogenic RAS signalling by altering its localization to endomembranes. Biochemical screening and subsequent structure-based hit optimization yielded inhibitors of the KRAS-PDEδ interaction that selectively bind to the prenyl-binding pocket of PDEδ with nanomolar affinity, inhibit oncogenic RAS signalling and suppress in vitro and in vivo proliferation of human pancreatic ductal adenocarcinoma cells that are dependent on oncogenic KRAS. Our findings may inspire novel drug discovery efforts aimed at the development of drugs targeting oncogenic RAS.
Insights
Researchers developed small molecules that disrupt the KRAS-PDEδ interaction, offering a new strategy to inhibit oncogenic RAS signaling and suppress pancreatic cancer cell proliferation.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- KRAS is a key target in cancer drug discovery, but direct inhibition has proven challenging.
- The prenyl-binding protein PDEδ regulates KRAS localization and signaling by controlling its diffusion.
- Altering KRAS localization is a potential strategy to suppress oncogenic RAS signaling.
Purpose of the Study:
- To investigate small molecules that interfere with the KRAS-PDEδ interaction.
- To explore a novel approach for suppressing oncogenic RAS signaling by targeting KRAS localization.
- To develop inhibitors of the KRAS-PDEδ interaction for potential anticancer therapies.
Main Methods:
- Biochemical screening to identify inhibitors of the KRAS-PDEδ interaction.
- Structure-based drug design for hit optimization.
- Assays to evaluate inhibition of oncogenic RAS signaling and cancer cell proliferation in vitro and in vivo.
Main Results:
- Identification of small molecules that selectively bind to PDEδ with nanomolar affinity.
- Demonstration that these inhibitors disrupt the KRAS-PDEδ interaction.
- Suppression of oncogenic RAS signaling and proliferation of KRAS-dependent pancreatic cancer cells.
Conclusions:
- Targeting the KRAS-PDEδ interaction with small molecules is a viable strategy for suppressing oncogenic RAS signaling.
- Inhibitors of the KRAS-PDEδ interaction show potential for treating KRAS-dependent cancers, particularly pancreatic ductal adenocarcinoma.
- This approach offers a novel avenue for anticancer drug discovery efforts targeting KRAS.
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