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Updated: May 11, 2026

The Soft Agar Colony Formation Assay
Published on: October 27, 2014
Histone demethylase KDM4C regulates sphere formation by mediating the cross talk between Wnt and Notch pathways in
Shinzo Yamamoto1, Keisuke Tateishi, Yotaro Kudo
1Department of Gastroenterology, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8655, Japan.
Abstract:
Alterations in genes coding for histone modifiers are found in human cancers, suggesting that histone modification is involved in malignant features of neoplastic cells. This study showed that a histone demethylase KDM4C is significant for colonosphere formation by mediating the cross talk between oncogenic pathways through a feed-forward mechanism. The expression of KDM4C gene was increased in spheres from colorectal cancer (CRC) cells and the knockdown (KD) of KDM4C eliminated colonosphere formation. We found that the KD of β-catenin, an important oncogenic factor in CRC, resulted in not only decreased sphere formation but also impaired upregulation of KDM4C gene in spheres. β-Catenin bound to the KDM4C promoter, suggesting that KDM4C is involved in the sphere-forming ability downstream of β-catenin in CRC cells. Microarray analysis identified the JAG1 gene that codes for a notch ligand Jagged1 responsible for sphere formation as a target of KDM4C. KDM4C KD decreased the expression of JAG1 gene, and the downregulation of JAG1 gene recapitulated the impaired colonosphere formation. JAG1 is also a target of β-catenin, and chromatin immunoprecipitation analysis showed the binding of β-catenin and KDM4C onto the JAG1 promoter during colonosphere formation. Importantly, KDM4C KD ruined the recruitment of β-catenin onto the JAG1 promoter independently of the H3-K9 methylation status and blunted JAG1 expression during sphere formation. These data indicate that KDM4C maintains the sphere-forming capacity in CRCs by mediating the β-catenin-dependent transcription of JAG1 in a feed-forward manner.
Insights
Histone demethylase KDM4C is crucial for colorectal cancer (CRC) sphere formation. It mediates a feed-forward loop involving β-catenin and JAG1, essential for maintaining cancer stem cell properties in CRC.
Area of Science:
- Molecular Oncology
- Cancer Stem Cell Biology
- Epigenetics
Background:
- Histone modifications play a role in cancer development.
- Histone demethylase KDM4C is implicated in neoplastic cell malignancy.
- Colonosphere formation is a key characteristic of cancer stem cells.
Purpose of the Study:
- To investigate the role of KDM4C in colorectal cancer (CRC) colonosphere formation.
- To elucidate the mechanism by which KDM4C regulates cancer stem cell properties.
- To identify the interplay between KDM4C, β-catenin, and JAG1 in CRC.
Main Methods:
- Gene expression analysis (microarray) to identify KDM4C targets.
- Knockdown (KD) experiments to assess gene function.
- Chromatin immunoprecipitation (ChIP) to study protein-DNA interactions.
- Analysis of β-catenin binding to KDM4C and JAG1 promoters.
Main Results:
- KDM4C expression is elevated in CRC spheres and essential for their formation.
- β-catenin directly binds to the KDM4C promoter, upregulating its expression.
- KDM4C targets JAG1, a Notch ligand crucial for sphere formation.
- KDM4C facilitates β-catenin recruitment to the JAG1 promoter, sustaining JAG1 expression.
Conclusions:
- KDM4C is a critical mediator of colonosphere formation in colorectal cancer.
- A feed-forward mechanism involving KDM4C, β-catenin, and JAG1 maintains CRC stemness.
- Targeting KDM4C may represent a therapeutic strategy for colorectal cancer.
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