A genome-wide association study identifies two risk loci for congenital heart malformations in Han Chinese

Zhibin Hu1, Yongyong Shi, Xuming Mo

  • 1State Key Laboratory of Reproductive Medicine, School of Public Health, Nanjing Medical University, Nanjing, China. zhibin_hu@njmu.edu.cn

Nature Genetics
|May 28, 2013
PubMed

Insights

This study identified common genetic variants associated with congenital heart malformation (CHM) in Han Chinese populations. These findings advance our understanding of the genetic basis of sporadic CHM.

Area of Science:

  • Genetics
  • Human Genetics
  • Congenital Disorders

Background:

  • Congenital heart malformation (CHM) is a leading cause of infant mortality.
  • Identifying genetic factors, especially low-penetrance variants in sporadic CHM, remains a challenge.

Purpose of the Study:

  • To identify common genetic variants linked to sporadic non-syndromic CHM in Han Chinese individuals.

Main Methods:

  • A multistage genome-wide association study (GWAS) was conducted.
  • The study included 4,225 CHM cases and 5,112 controls across multiple stages.

Main Results:

  • Significant associations were found at 1p12 (near TBX15) and 4q31.1 (in MAML3).
  • Specific variants rs2474937 and rs1531070 showed strong associations with CHM.

Conclusions:

  • The study identified novel genetic variants contributing to CHM in Han Chinese populations.
  • These findings expand the current knowledge of CHM genetic architecture.

Related Concept Videos

Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Pharmacogenomics: Identification of New Drug Targets01:29

Pharmacogenomics: Identification of New Drug Targets

Advances in genomics have profoundly influenced drug discovery by increasing both the speed and accuracy of pharmaceutical development. Pharmacogenomics, which examines how genetic variation influences drug response, facilitates the identification of novel therapeutic targets and enables patient stratification for personalized treatment. These strategies contribute to improved drug efficacy, minimized adverse effects, and more efficient clinical trial design.Mapping genetic differences...
Animal Mitochondrial Genetics02:59

Animal Mitochondrial Genetics

Among all the organelles in an animal cell, only mitochondria have their own independent genomes. Animal mitochondrial DNA is a double-stranded, closed-circular molecule with around 20,000 base pairs. Mitochondrial DNA is unique in that one of its two strands, the heavy, or H, -strand is guanine rich, whereas the complementary strand is cytosine rich and called the light, or L, -strand. Compared to nuclear DNA, mitochondrial DNA has a very low percentage of non-coding regions and is marked by...
Human Genetics01:28

Human Genetics

Human genetics provides a profound framework for understanding the interplay between genetic predispositions and human psychology. At the heart of this discipline lies the study of how genes influence physical traits, behaviors, and susceptibility to diseases. Each person carries a unique genetic code that subtly or significantly shapes their psychological and behavioral landscape.
The complex relationship between genetics and psychology is observable through common biological components such...