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Assaying Protein Kinase Activity with Radiolabeled ATP
Published on: May 26, 2017
Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions
Mathieu Courcelles1, Christophe Frémin, Laure Voisin
1Institute for Research in Immunology and Cancer, Université de Montréal, Montreal, Quebec, Canada.
Abstract:
The ERK1/2 MAP kinase pathway is an evolutionarily conserved signaling module that controls many fundamental physiological processes. Deregulated activity of ERK1/2 MAP kinases is associated with developmental syndromes and several human diseases. Despite the importance of this pathway, a comprehensive picture of the natural substrate repertoire and biochemical mechanisms regulated by ERK1/2 is still lacking. In this study, we used large-scale quantitative phosphoproteomics and bioinformatics analyses to identify novel candidate ERK1/2 substrates based on their phosphorylation signature and kinetic profiles in epithelial cells. We identified a total of 7936 phosphorylation sites within 1861 proteins, of which 155 classify as candidate ERK1/2 substrates, including 128 new targets. Candidate ERK1/2 substrates are involved in diverse cellular processes including transcriptional regulation, chromatin remodeling, RNA splicing, cytoskeleton dynamics, cellular junctions and cell signaling. Detailed characterization of one newly identified substrate, the transcriptional regulator JunB, revealed that ERK1/2 phosphorylate JunB on a serine adjacent to the DNA-binding domain, resulting in increased DNA-binding affinity and transcriptional activity. Our study expands the spectrum of cellular functions controlled by ERK1/2 kinases.
Insights
Researchers identified new targets of the ERK1/2 MAP kinase pathway using phosphoproteomics. This reveals ERK1/2
Area of Science:
- Cellular signaling
- Molecular biology
- Biochemistry
Background:
- The ERK1/2 MAP kinase pathway regulates critical physiological processes.
- Dysregulation of ERK1/2 is linked to human diseases and developmental disorders.
- A complete understanding of ERK1/2 substrates and regulatory mechanisms is currently lacking.
Purpose of the Study:
- To identify novel substrates of the ERK1/2 pathway.
- To elucidate the biochemical mechanisms regulated by ERK1/2.
- To expand the known cellular functions controlled by ERK1/2 kinases.
Main Methods:
- Large-scale quantitative phosphoproteomics was employed to identify potential substrates.
- Bioinformatics analyses were used to analyze phosphorylation signatures and kinetic profiles.
- Epithelial cells were utilized for the experimental investigation.
Main Results:
- A total of 7936 phosphorylation sites in 1861 proteins were identified.
- 155 proteins were classified as candidate ERK1/2 substrates, including 128 novel targets.
- Newly identified substrates participate in transcriptional regulation, chromatin remodeling, RNA splicing, cytoskeleton dynamics, and cell signaling.
Conclusions:
- The study significantly expands the known repertoire of ERK1/2 substrates.
- ERK1/2 kinases regulate a wide array of cellular functions.
- Phosphorylation of the transcriptional regulator JunB by ERK1/2 enhances its DNA-binding and transcriptional activity.
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