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Assessing Cellular Target Engagement by SHP2 (PTPN11) Phosphatase Inhibitors
Published on: July 17, 2020
A potent and selective small-molecule inhibitor for the lymphoid-specific tyrosine phosphatase (LYP), a target
Yantao He1, Sijiu Liu, Ambili Menon
1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, Indiana 46202, USA.
Abstract:
Lymphoid-specific tyrosine phosphatase (LYP), a member of the protein tyrosine phosphatase (PTP) family of signaling enzymes, is associated with a broad spectrum of autoimmune diseases. Herein we describe our structure-based lead optimization efforts within a 6-hydroxy-benzofuran-5-carboxylic acid series culminating in the identification of compound 8b, a potent and selective inhibitor of LYP with a K(i) value of 110 nM and more than 9-fold selectivity over a large panel of PTPs. The structure of LYP in complex with 8b was obtained by X-ray crystallography, providing detailed information about the molecular recognition of small-molecule ligands binding LYP. Importantly, compound 8b possesses highly efficacious cellular activity in both T- and mast cells and is capable of blocking anaphylaxis in mice. Discovery of 8b establishes a starting point for the development of clinically useful LYP inhibitors for treating a wide range of autoimmune disorders.
Insights
Researchers identified compound 8b, a potent inhibitor of lymphoid-specific tyrosine phosphatase (LYP), a key player in autoimmune diseases. This discovery offers a promising avenue for developing new treatments for autoimmune disorders.
Area of Science:
- Biochemistry
- Immunology
- Medicinal Chemistry
Background:
- Lymphoid-specific tyrosine phosphatase (LYP) is implicated in various autoimmune diseases.
- Protein tyrosine phosphatases (PTPs) are critical signaling enzymes in cellular processes.
Purpose of the Study:
- To optimize a series of 6-hydroxy-benzofuran-5-carboxylic acids as LYP inhibitors.
- To identify a potent and selective LYP inhibitor for potential therapeutic use.
Main Methods:
- Structure-based drug design and lead optimization.
- X-ray crystallography to determine LYP-ligand complex structure.
- In vitro biochemical and cellular assays to assess inhibitor potency and selectivity.
Main Results:
- Identified compound 8b, a potent LYP inhibitor with a K(i) of 110 nM.
- Compound 8b demonstrated >9-fold selectivity over other PTPs.
- Compound 8b showed cellular activity in T- and mast cells and blocked anaphylaxis in mice.
Conclusions:
- Compound 8b is a highly effective and selective LYP inhibitor.
- The structure of LYP complexed with 8b provides insights into molecular recognition.
- Compound 8b represents a valuable starting point for developing LYP inhibitors for autoimmune diseases.
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