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Updated: May 11, 2026

Imaging Flow Cytometry to Study Microbial Autoaggregation
Published on: September 29, 2023
Quantitative image analysis for the characterization of microbial aggregates in biological wastewater treatment: a
J C Costa1, D P Mesquita, A L Amaral
1Institute for Biotechnology and Bioengineering (IBB), Centre of Biological Engineering, Universidade do Minho, 4710-057, Braga, Portugal.
Abstract:
Quantitative image analysis techniques have gained an undeniable role in several fields of research during the last decade. In the field of biological wastewater treatment (WWT) processes, several computer applications have been developed for monitoring microbial entities, either as individual cells or in different types of aggregates. New descriptors have been defined that are more reliable, objective, and useful than the subjective and time-consuming parameters classically used to monitor biological WWT processes. Examples of this application include the objective prediction of filamentous bulking, known to be one of the most problematic phenomena occurring in activated sludge technology. It also demonstrated its usefulness in classifying protozoa and metazoa populations. In high-rate anaerobic processes, based on granular sludge, aggregation times and fragmentation phenomena could be detected during critical events, e.g., toxic and organic overloads. Currently, the major efforts and needs are in the development of quantitative image analysis techniques focusing on its application coupled with stained samples, either by classical or fluorescent-based techniques. The use of quantitative morphological parameters in process control and online applications is also being investigated. This work reviews the major advances of quantitative image analysis applied to biological WWT processes.

