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Detection and Visualization of DNA Damage-induced Protein Complexes in Suspension Cell Cultures Using the Proximity Ligation Assay
Published on: June 9, 2017
A novel interplay between the Fanconi anemia core complex and ATR-ATRIP kinase during DNA cross-link repair
Junya Tomida1, Akiko Itaya, Tomoko Shigechi
1Department of Late Effects Studies, Laboratory of DNA Damage Signaling, Kyoto University, Kyoto 606-8501, Japan, Japan Society for the Promotion of Science (JSPS), Tokyo 102-0083, Japan.
Abstract:
When DNA replication is stalled at sites of DNA damage, a cascade of responses is activated in the cell to halt cell cycle progression and promote DNA repair. A pathway initiated by the kinase Ataxia teleangiectasia and Rad3 related (ATR) and its partner ATR interacting protein (ATRIP) plays an important role in this response. The Fanconi anemia (FA) pathway is also activated following genomic stress, and defects in this pathway cause a cancer-prone hematologic disorder in humans. Little is known about how these two pathways are coordinated. We report here that following cellular exposure to DNA cross-linking damage, the FA core complex enhances binding and localization of ATRIP within damaged chromatin. In cells lacking the core complex, ATR-mediated phosphorylation of two functional response targets, ATRIP and FANCI, is defective. We also provide evidence that the canonical ATR activation pathway involving RAD17 and TOPBP1 is largely dispensable for the FA pathway activation. Indeed DT40 mutant cells lacking both RAD17 and FANCD2 were synergistically more sensitive to cisplatin compared with either single mutant. Collectively, these data reveal new aspects of the interplay between regulation of ATR-ATRIP kinase and activation of the FA pathway.
Insights
The Fanconi anemia (FA) core complex enhances DNA repair by aiding ATR-ATRIP kinase localization to damaged DNA. This coordination is crucial for cellular response to genomic stress and DNA damage.
Area of Science:
- Cellular Biology
- Molecular Biology
- Genetics
Background:
- DNA damage triggers cellular responses to halt cell cycle and repair DNA.
- The Ataxia teleangiectasia and Rad3 related (ATR) kinase pathway and the Fanconi anemia (FA) pathway are critical for genomic stability.
- Coordination between ATR-ATRIP and FA pathways remains poorly understood.
Purpose of the Study:
- To elucidate the interplay between the ATR-ATRIP kinase pathway and the Fanconi anemia (FA) pathway.
- To investigate how the FA pathway influences ATR-ATRIP activation following DNA damage.
Main Methods:
- Exposure of cells to DNA cross-linking agents.
- Chromatin immunoprecipitation to assess protein localization.
- Analysis of protein phosphorylation in wild-type and mutant cells.
- Sensitivity assays in gene-deficient cell lines.
Main Results:
- The FA core complex promotes ATR-Interacting Protein (ATRIP) binding and localization to damaged chromatin.
- ATR-mediated phosphorylation of ATRIP and FANCI is impaired in cells lacking the FA core complex.
- The canonical ATR activation pathway (RAD17/TOPBP1) is not essential for FA pathway activation.
- Cells deficient in both RAD17 and FANCD2 exhibit synergistic sensitivity to cisplatin.
Conclusions:
- The FA core complex plays a regulatory role in ATR-ATRIP kinase activation at sites of DNA damage.
- This study reveals novel mechanisms coordinating ATR and FA pathway responses to DNA damage.
- Findings highlight the intricate crosstalk essential for maintaining genomic integrity.
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